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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052707 through 18771 annotations produced 1 hits



Anaphase Promoting Complex 4 (APC4):

Annotation Number : CG32707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052707
Gbrowse : chrX:8976963-8979905 (+) // 100.0 //
Probeset : 1637244_at
Accessions : protein= NP_001162714; /// NP_572522;, nucleotide= NM_001169243; /// NM_132294;
Interpro : 0003729 // mRNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0052707.
BDGP gene expression has embryonic in situ data for CG32707: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 14 of 4 1.10Up
Head24 24 of 4 0.60Down
Eye32 34 of 4 0.76None
Thoracicoabdominal ganglion46 24 of 4 1.10None
Salivary gland31 23 of 4 0.72Down
Crop32 24 of 4 0.80Down
Midgut22 24 of 4 0.50Down
Tubule16 23 of 4 0.40Down
Hindgut20 04 of 4 0.50Down
Heart25 34 of 4 0.58Down
Fat body17 44 of 4 0.41Down
Ovary76 24 of 4 1.80Up
Testis32 14 of 4 0.80Down
Male accessory glands51 84 of 4 1.20None
Virgin spermatheca18 14 of 4 0.43Down
Mated spermatheca21 14 of 4 0.50Down
Adult carcass16 31 of 4 0.40Down
Larval CNS76 94 of 4 1.78Up
Larval Salivary gland40 44 of 4 0.93None
Larval midgut22 44 of 4 0.53Down
Larval tubule20 24 of 4 0.50Down
Larval hindgut25 24 of 4 0.60Down
Larval fat body19 13 of 4 0.40Down
Larval trachea37 34 of 4 0.87Down
Larval carcass28 24 of 4 0.66Down
S2 cells (growing)54 24 of 4 1.27Up
Whole fly43 04 of 4

Looking for FBgn0052707. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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