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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052708 through 18771 annotations produced 1 hits



/// (CG32708 /// DsimGD16928):

Annotation Number : CG32708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052708
Gbrowse : chrX:8980017-8980815 (+) // 100.0 //
Probeset : 1631251_at
Accessions : protein= NP_727306;, nucleotide= NM_167174;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052708.
BioGrid reports that CG32708 interacts with CG3918 .
VDRC has 2 RNAi stocks for FBgn0052708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 44 of 4 0.80None
Head63 ± 34 of 4 0.70Down
Eye101 ± 34 of 4 1.18Up
Thoracicoabdominal ganglion87 ± 24 of 4 1.00None
Salivary gland55 ± 94 of 4 0.64Down
Crop70 ± 44 of 4 0.80Down
Midgut60 ± 24 of 4 0.70Down
Tubule41 ± 64 of 4 0.50Down
Hindgut40 ± 24 of 4 0.50Down
Heart71 ± 64 of 4 0.83None
Fat body68 ± 64 of 4 0.80Down
Ovary160 ± 14 of 4 1.90Up
Testis79 ± 24 of 4 0.90None
Male accessory glands132 ± 44 of 4 1.50Up
Virgin spermatheca83 ± 34 of 4 0.96None
Mated spermatheca101 ± 34 of 4 1.18Up
Adult carcass54 ± 64 of 4 0.60Down
Larval CNS118 ± 44 of 4 1.37Up
Larval Salivary gland67 ± 34 of 4 0.78Down
Larval midgut45 ± 04 of 4 0.53Down
Larval tubule60 ± 14 of 4 0.70Down
Larval hindgut61 ± 04 of 4 0.71Down
Larval fat body57 ± 44 of 4 0.70Down
Larval trachea117 ± 154 of 4 1.36Up
Larval carcass66 ± 84 of 4 0.77None
S2 cells (growing)122 ± 34 of 4 1.42Up
Whole fly86 ± 44 of 4

Looking for FBgn0052708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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