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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052726 through 18771 annotations produced 1 hits


Annotation Number : CG32726
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052726
Gbrowse : chrX:7319256-7319776 (-) // 100.0 //
Probeset : 1627529_at
Accessions : protein= NP_727188;, nucleotide= NM_167127;
FlyMine data for FBgn0052726.
BDGP gene expression has embryonic in situ data for CG32726: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052726 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 54 of 4 1.00None
Head613 464 of 420.40Up
Eye2 00 of 4 0.07Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland19 31 of 4 0.64None
Crop9 10 of 4 0.30Down
Midgut4 10 of 4 0.20Down
Tubule3 00 of 4 0.10Down
Hindgut4 10 of 4 0.20Down
Heart2 10 of 4 0.07Down
Fat body14 61 of 4 0.47Down
Ovary2 10 of 4 0.10Down
Testis2 10 of 4 0.10Down
Male accessory glands5 20 of 4 0.20Down
Virgin spermatheca12 02 of 4 0.41Down
Mated spermatheca13 21 of 4 0.43Down
Adult carcass22 61 of 4 0.70None
Larval CNS7 32 of 4 0.24Down
Larval Salivary gland4 00 of 4 0.14Down
Larval midgut3 10 of 4 0.12Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut7 11 of 4 0.24Down
Larval fat body4 20 of 4 0.20Down
Larval trachea4 21 of 4 0.16Down
Larval carcass6 20 of 4 0.22Down
S2 cells (growing)3 10 of 4 0.11Down
Whole fly30 44 of 4

Looking for FBgn0052726. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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