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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052736 through 18771 annotations produced 2 hits



/// (CG32736 /// CG42308):

Annotation Number : CG32736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052736 /// FBgn0259204
Gbrowse : chrX:6905526-6906169 (+) // 100.0 //
Probeset : 1634582_at
Accessions : protein= NP_001138171; /// NP_001138172; /// NP_727152; /// NP_727153;, nucleotide= NM_001144699; /// NM_001144700; /// NM_167106; /// NM_167107;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052736 /// FBgn0259204.
BioGrid reports that CG32736 interacts with CG3812 CG7191 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 184 of 4 1.50Up
Head215 154 of 4 1.40Up
Eye347 34 of 4 2.31Up
Thoracicoabdominal ganglion248 64 of 4 1.70Up
Salivary gland177 204 of 4 1.18None
Crop272 74 of 4 1.80Up
Midgut140 34 of 4 0.90None
Tubule52 64 of 4 0.40Down
Hindgut241 54 of 4 1.60Up
Heart187 54 of 4 1.25Up
Fat body136 224 of 4 0.91None
Ovary166 44 of 4 1.10None
Testis146 44 of 4 1.00None
Male accessory glands59 44 of 4 0.40Down
Virgin spermatheca80 54 of 4 0.54Down
Mated spermatheca76 14 of 4 0.51Down
Adult carcass191 144 of 4 1.30None
Larval CNS112 134 of 4 0.75Down
Larval Salivary gland80 44 of 4 0.54Down
Larval midgut91 134 of 4 0.61Down
Larval tubule49 44 of 4 0.30Down
Larval hindgut164 144 of 4 1.10None
Larval fat body83 44 of 4 0.60Down
Larval trachea139 204 of 4 0.93None
Larval carcass143 194 of 4 0.95None
S2 cells (growing)86 14 of 4 0.57Down
Whole fly150 124 of 4



/// (CG32736 /// CG42308):

Annotation Number : CT34089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052736 /// FBgn0259204
Gbrowse : chrX:6905941-6906127 (+) // 100.0 //
Probeset : 1630983_s_at
Accessions : protein= NP_001138171; /// NP_001138172; /// NP_727152; /// NP_727153;, nucleotide= NM_001144699; /// NM_001144700; /// NM_167106; /// NM_167107;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052736 /// FBgn0259204.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 14 of 4 1.50Up
Head295 84 of 4 1.40Up
Eye423 114 of 4 2.07Up
Thoracicoabdominal ganglion457 244 of 4 2.20Up
Salivary gland249 214 of 4 1.22None
Crop407 304 of 4 2.00Up
Midgut130 54 of 4 0.60Down
Tubule264 364 of 4 1.30None
Hindgut288 64 of 4 1.40Up
Heart213 94 of 4 1.05None
Fat body207 134 of 4 1.02None
Ovary221 64 of 4 1.10None
Testis173 64 of 4 0.80None
Male accessory glands78 44 of 4 0.40Down
Virgin spermatheca460 154 of 4 2.25Up
Mated spermatheca475 284 of 4 2.33Up
Adult carcass321 224 of 4 1.60Up
Larval CNS156 114 of 4 0.76Down
Larval Salivary gland133 24 of 4 0.65Down
Larval midgut94 84 of 4 0.46Down
Larval tubule63 44 of 4 0.30Down
Larval hindgut259 184 of 4 1.27None
Larval fat body80 54 of 4 0.40Down
Larval trachea156 224 of 4 0.76Down
Larval carcass167 154 of 4 0.82None
S2 cells (growing)86 64 of 4 0.42Down
Whole fly204 104 of 4

Looking for FBgn0052736. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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