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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052750 through 18771 annotations produced 1 hits



(CG32750):

Annotation Number : CG32750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052750
Gbrowse : chrX:6088820-6090450 (-) // 100.0 //
Probeset : 1634445_at
Accessions : protein= NP_727067;, nucleotide= NM_167060;
Pathway : 0019898 // extrinsic to membrane // inferred from sequence or structural similarity
Interpro : "0016787 // hydrolase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // i
FlyMine data for FBgn0052750.
Homophila reports that CG32750 is a close match (3e-30) to human gene BTD (NP_000051), a gene associated with Biotinidase deficiency, 253260 (3).
VDRC has 3 RNAi stocks for FBgn0052750 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head5 ± 20 of 4 0.70None
Eye3 ± 10 of 4 0.42Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland7 ± 10 of 4 0.93None
Crop8 ± 20 of 4 1.10None
Midgut52 ± 34 of 4 6.40Up
Tubule170 ± 444 of 420.70Up
Hindgut9 ± 30 of 4 1.20None
Heart7 ± 20 of 4 0.92None
Fat body18 ± 21 of 4 2.20Up
Ovary0 ± 00 of 4 0.10Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca84 ± 94 of 410.25Up
Mated spermatheca75 ± 44 of 4 9.18Up
Adult carcass18 ± 20 of 4 2.30Up
Larval CNS0 ± 00 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.16Down
Larval midgut101 ± 124 of 412.34Up
Larval tubule50 ± 24 of 4 6.10Up
Larval hindgut19 ± 10 of 4 2.31Up
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea0 ± 00 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.11Down
Whole fly8 ± 10 of 4

Looking for FBgn0052750. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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