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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052756 through 18771 annotations produced 1 hits


Annotation Number : CG32756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052756
Gbrowse : chrX:5839742-5841891 (+) // 100.0 // /// chrX:5836664-5839057 (+) // 92.0 //
Probeset : 1628338_at
Accessions : protein= NP_727053;, nucleotide= NM_167055;
FlyMine data for FBgn0052756.
BDGP gene expression has embryonic in situ data for CG32756: 16 pix of staining in 3 body parts.
BioGrid reports that CG32756 interacts with CG4218 CG8507 .
TRiP has 1 RNAi stocks for FBgn0052756 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052756 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain254 114 of 4 1.10None
Head100 74 of 4 0.40Down
Eye241 204 of 4 1.06None
Thoracicoabdominal ganglion209 154 of 4 0.90None
Salivary gland77 44 of 4 0.34Down
Crop109 74 of 4 0.50Down
Midgut96 24 of 4 0.40Down
Tubule109 84 of 4 0.50Down
Hindgut77 44 of 4 0.30Down
Heart93 64 of 4 0.41Down
Fat body104 94 of 4 0.46Down
Ovary508 134 of 4 2.20Up
Testis440 274 of 4 1.90Up
Male accessory glands273 164 of 4 1.20None
Virgin spermatheca93 44 of 4 0.41Down
Mated spermatheca203 274 of 4 0.89None
Adult carcass81 54 of 4 0.40Down
Larval CNS333 294 of 4 1.47Up
Larval Salivary gland107 84 of 4 0.47Down
Larval midgut106 94 of 4 0.47Down
Larval tubule182 124 of 4 0.80Down
Larval hindgut142 94 of 4 0.63Down
Larval fat body205 484 of 4 0.90None
Larval trachea214 134 of 4 0.94None
Larval carcass107 64 of 4 0.47Down
S2 cells (growing)357 134 of 4 1.57Up
Whole fly227 84 of 4

Looking for FBgn0052756. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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