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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052758 through 18771 annotations produced 2 hits



(CG32758):

Annotation Number : CT36275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052758
Gbrowse : chrX:5614504-5614888 (-) // 100.0 //
Probeset : 1627179_s_at
Accessions : protein= NP_727023;, nucleotide= NM_167045;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0052758.
TRiP has 1 RNAi stocks for FBgn0052758 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 34 of 4 3.30Up
Head30 44 of 4 1.60None
Eye33 44 of 4 1.73Up
Thoracicoabdominal ganglion31 44 of 4 1.60None
Salivary gland21 23 of 4 1.10None
Crop13 14 of 4 0.70Down
Midgut10 23 of 4 0.50Down
Tubule4 01 of 4 0.20Down
Hindgut19 24 of 4 1.00None
Heart30 24 of 4 1.58Up
Fat body29 14 of 4 1.54Up
Ovary45 24 of 4 2.40Up
Testis2 01 of 4 0.10Down
Male accessory glands10 21 of 4 0.50Down
Virgin spermatheca6 02 of 4 0.33Down
Mated spermatheca4 11 of 4 0.23Down
Adult carcass18 42 of 4 1.00None
Larval CNS45 94 of 4 2.37Up
Larval Salivary gland8 31 of 4 0.42Down
Larval midgut12 23 of 4 0.67Down
Larval tubule13 04 of 4 0.70Down
Larval hindgut15 14 of 4 0.79None
Larval fat body195 194 of 410.20Up
Larval trachea10 43 of 4 0.55Down
Larval carcass12 14 of 4 0.63Down
S2 cells (growing)67 34 of 4 3.53Up
Whole fly19 14 of 4



(CG32758):

Annotation Number : CG32758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052758
Gbrowse : chrX:5613767-5632072 (-) // 100.0 //
Probeset : 1637506_at
Accessions : protein= NP_727023;, nucleotide= NM_167045;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0052758.
BioGrid reports that CG32758 interacts with CG3386 CG4162 .
TRiP has 1 RNAi stocks for FBgn0052758 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain392 74 of 4 4.60Up
Head237 54 of 4 2.80Up
Eye389 114 of 4 4.57Up
Thoracicoabdominal ganglion351 44 of 4 4.10Up
Salivary gland212 74 of 4 2.48Up
Crop124 44 of 4 1.50Up
Midgut83 34 of 4 1.00None
Tubule81 94 of 4 0.90None
Hindgut136 34 of 4 1.60Up
Heart368 104 of 4 4.32Up
Fat body201 204 of 4 2.35Up
Ovary141 04 of 4 1.70Up
Testis13 04 of 4 0.20Down
Male accessory glands60 34 of 4 0.70Down
Virgin spermatheca46 34 of 4 0.54Down
Mated spermatheca55 44 of 4 0.65Down
Adult carcass147 94 of 4 1.70Up
Larval CNS396 244 of 4 4.64Up
Larval Salivary gland82 24 of 4 0.97None
Larval midgut118 14 of 4 1.39Up
Larval tubule108 64 of 4 1.30Up
Larval hindgut102 24 of 4 1.19Up
Larval fat body466 224 of 4 5.50Up
Larval trachea220 174 of 4 2.58Up
Larval carcass130 44 of 4 1.53Up
S2 cells (growing)381 24 of 4 4.47Up
Whole fly85 44 of 4

Looking for FBgn0052758. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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