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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052767 through 18771 annotations produced 2 hits



(CG32767):

Annotation Number : CG40450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052767 /// FBgn0085734
Gbrowse : chrU:2072071-2074746 (-) // 100.0 // /// chrX:4971169-4974641 (-) // 90.11 //
Probeset : 1633444_s_at
Accessions : protein= NP_001162674; /// NP_001162675; /// NP_572203; /// NP_996351;, nucleotide= NM_001169203; /// NM_001169204; /// NM_131975; /// NM_206628;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0052767 /// FBgn0085734.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 1.60None
Head9 13 of 4 0.70None
Eye9 11 of 4 0.68None
Thoracicoabdominal ganglion12 23 of 4 0.90None
Salivary gland6 10 of 4 0.50None
Crop9 32 of 4 0.70None
Midgut7 02 of 4 0.50None
Tubule3 00 of 4 0.20Down
Hindgut9 22 of 4 0.70None
Heart0 00 of 4 0.05Down
Fat body5 21 of 4 0.40Down
Ovary16 04 of 4 1.20None
Testis18 24 of 4 1.30None
Male accessory glands12 21 of 4 0.90None
Virgin spermatheca2 00 of 4 0.19Down
Mated spermatheca4 10 of 4 0.32Down
Adult carcass11 30 of 4 0.80None
Larval CNS15 24 of 4 1.14None
Larval Salivary gland5 10 of 4 0.38Down
Larval midgut6 10 of 4 0.50None
Larval tubule9 10 of 4 0.70None
Larval hindgut5 10 of 4 0.39Down
Larval fat body3 11 of 4 0.20Down
Larval trachea2 10 of 4 0.15Down
Larval carcass5 10 of 4 0.39Down
S2 cells (growing)16 14 of 4 1.24None
Whole fly13 24 of 4



(CG32767):

Annotation Number : CG32767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052767
Gbrowse : chrX:4968671-4975106 (-) // 99.92 //
Probeset : 1627122_at
Accessions : protein= NP_001162674; /// NP_001162675; /// NP_572203; /// NP_996351;, nucleotide= NM_001169203; /// NM_001169204; /// NM_131975; /// NM_206628;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0052767.
BDGP gene expression has embryonic in situ data for CG32767: 4 pix of staining in 1 body parts.
Homophila reports that CG32767 is a close match (1e-11) to human gene HTX;HTX1;ZIC3 (NP_003404), a gene associated with Heterotaxy, X-linked visceral, 306955 (3).
BioGrid reports that CG32767 interacts with CG5717 .
VDRC has 3 RNAi stocks for FBgn0052767 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 114 of 4 3.20Up
Head48 24 of 4 0.70Down
Eye59 74 of 4 0.87None
Thoracicoabdominal ganglion121 94 of 4 1.80Up
Salivary gland37 54 of 4 0.54Down
Crop100 34 of 4 1.50Up
Midgut40 14 of 4 0.60Down
Tubule86 34 of 4 1.30Up
Hindgut74 14 of 4 1.10None
Heart56 54 of 4 0.82None
Fat body94 84 of 4 1.37Up
Ovary368 74 of 4 5.30Up
Testis16 24 of 4 0.20Down
Male accessory glands57 14 of 4 0.80None
Virgin spermatheca60 34 of 4 0.87None
Mated spermatheca86 74 of 4 1.25None
Adult carcass49 34 of 4 0.70Down
Larval CNS294 344 of 4 4.27Up
Larval Salivary gland87 74 of 4 1.26None
Larval midgut42 54 of 4 0.61Down
Larval tubule94 74 of 4 1.40Up
Larval hindgut88 44 of 4 1.29Up
Larval fat body34 24 of 4 0.50Down
Larval trachea98 24 of 4 1.42Up
Larval carcass100 54 of 4 1.46Up
S2 cells (growing)124 54 of 4 1.81Up
Whole fly69 44 of 4

Looking for FBgn0052767. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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