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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052774 through 18771 annotations produced 1 hits

Mucin 4B (Muc4B):

Annotation Number : CG32774
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052774
Gbrowse : chrX:4138253-4139802 (-) // 100.0 //
Probeset : 1624810_at
Accessions : protein= NP_726915;, nucleotide= NM_167006;
FlyMine data for FBgn0052774.
VDRC has 2 RNAi stocks for FBgn0052774 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00None
Head1 00 of 4 0.00None
Eye2 10 of 4 0.03None
Thoracicoabdominal ganglion5 10 of 4 0.10None
Salivary gland3 00 of 4 0.03None
Crop3 00 of 4 0.00None
Midgut4 10 of 4 0.00None
Tubule2 10 of 4 0.00Down
Hindgut3 00 of 4 0.00None
Heart1 00 of 4 0.02None
Fat body4 00 of 4 0.05None
Ovary237 324 of 4 2.50Up
Testis13 32 of 4 0.10None
Male accessory glands3 20 of 4 0.00None
Virgin spermatheca4 10 of 4 0.05None
Mated spermatheca1 00 of 4 0.01None
Adult carcass9 50 of 4 0.10None
Larval CNS1 00 of 4 0.02None
Larval Salivary gland1 00 of 4 0.01None
Larval midgut4 10 of 4 0.05None
Larval tubule2 00 of 4 0.00None
Larval hindgut2 00 of 4 0.03None
Larval fat body6 10 of 4 0.10None
Larval trachea2 20 of 4 0.03None
Larval carcass3 10 of 4 0.04None
S2 cells (growing)4 00 of 4 0.04None
Whole fly94 324 of 4

Looking for FBgn0052774. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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