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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052791 through 18771 annotations produced 1 hits



(CG32791):

Annotation Number : CG32791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052791
Gbrowse : chrX:3405369-3424695 (-) // 99.55 //
Probeset : 1633062_at
Accessions : protein= NP_726871;, nucleotide= NM_166976;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052791.
BDGP gene expression has embryonic in situ data for CG32791: 8 pix of staining in 4 body parts.
Homophila reports that CG32791 is a close match (3e-12) to human gene HSPG2;PLC;SJS;SJA;SJS1 (NP_005520), a gene associated with Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3);Schwartz-Jampel syndrome, type 1, 255800 (3).
BioGrid reports that CG32791 interacts with CG9045 .
TRiP has 1 RNAi stocks for FBgn0052791 available for purchase.
VDRC has 6 RNAi stocks for FBgn0052791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 34 of 4 7.70Up
Head22 ± 03 of 4 2.50Up
Eye15 ± 31 of 4 1.75None
Thoracicoabdominal ganglion68 ± 74 of 4 7.70Up
Salivary gland38 ± 21 of 4 4.26Up
Crop14 ± 10 of 4 1.70Up
Midgut15 ± 10 of 4 1.70Up
Tubule16 ± 02 of 4 1.90Up
Hindgut16 ± 11 of 4 1.80Up
Heart15 ± 12 of 4 1.77Up
Fat body35 ± 74 of 4 3.94Up
Ovary14 ± 04 of 4 1.60Up
Testis7 ± 10 of 4 0.80None
Male accessory glands24 ± 01 of 4 2.70Up
Virgin spermatheca24 ± 14 of 4 2.68Up
Mated spermatheca29 ± 64 of 4 3.34Up
Adult carcass25 ± 13 of 4 2.80Up
Larval CNS61 ± 144 of 4 6.92Up
Larval Salivary gland27 ± 30 of 4 3.08Up
Larval midgut16 ± 10 of 4 1.78Up
Larval tubule7 ± 10 of 4 0.90None
Larval hindgut17 ± 22 of 4 1.92Up
Larval fat body13 ± 01 of 4 1.50Up
Larval trachea19 ± 34 of 4 2.19Up
Larval carcass16 ± 11 of 4 1.85Up
S2 cells (growing)27 ± 33 of 4 3.06Up
Whole fly9 ± 10 of 4

Looking for FBgn0052791. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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