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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052792 through 18771 annotations produced 2 hits



():

Annotation Number : CG32792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:3462435-3465833 (+) // 100.0 //
Probeset : 1637579_at
Accessions : protein= NP_001036260; /// NP_001138151;, nucleotide= NM_001042795; /// NM_001144679;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 2.70None
Head3 00 of 4 1.40None
Eye3 10 of 4 1.35None
Thoracicoabdominal ganglion6 20 of 4 2.70None
Salivary gland3 10 of 4 1.61None
Crop2 00 of 4 1.10None
Midgut7 00 of 4 3.00Up
Tubule2 00 of 4 1.10Up
Hindgut3 00 of 4 1.50None
Heart4 00 of 4 1.75None
Fat body7 30 of 4 3.38Up
Ovary9 00 of 4 3.90Up
Testis0 00 of 4 0.20None
Male accessory glands5 10 of 4 2.20None
Virgin spermatheca4 10 of 4 1.81None
Mated spermatheca2 10 of 4 0.92None
Adult carcass1 00 of 4 0.50None
Larval CNS8 22 of 4 3.45Up
Larval Salivary gland2 00 of 4 1.04None
Larval midgut2 00 of 4 1.06None
Larval tubule4 10 of 4 1.70None
Larval hindgut2 10 of 4 0.97None
Larval fat body10 22 of 4 4.50Up
Larval trachea3 10 of 4 1.51None
Larval carcass3 10 of 4 1.57None
S2 cells (growing)1 00 of 4 0.61None
Whole fly2 00 of 4



(CG32792):

Annotation Number : CG32792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052792
Gbrowse : chrX:3464007-3465833 (+) // 100.0 //
Probeset : 1640027_a_at
Accessions : protein= NP_001036260; /// NP_001138151;, nucleotide= NM_001042795; /// NM_001144679;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0052792.
TRiP has 1 RNAi stocks for FBgn0052792 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 419.10Up
Head2 10 of 4 5.10None
Eye1 00 of 4 2.39None
Thoracicoabdominal ganglion13 22 of 430.00Up
Salivary gland1 00 of 4 3.94None
Crop1 00 of 4 2.20None
Midgut1 00 of 4 2.30Up
Tubule0 00 of 4 2.10None
Hindgut0 00 of 4 1.60None
Heart1 00 of 4 2.72None
Fat body0 00 of 4 1.83None
Ovary2 00 of 4 4.40None
Testis0 00 of 4 1.30None
Male accessory glands0 00 of 4 1.50None
Virgin spermatheca0 00 of 4 1.50None
Mated spermatheca2 00 of 4 5.44None
Adult carcass1 00 of 4 2.90None
Larval CNS2 00 of 4 4.89Up
Larval Salivary gland1 00 of 4 2.33None
Larval midgut1 00 of 4 2.44Up
Larval tubule1 00 of 4 3.10None
Larval hindgut0 00 of 4 1.17None
Larval fat body3 20 of 4 7.60None
Larval trachea1 00 of 4 2.44None
Larval carcass1 00 of 4 2.44Up
S2 cells (growing)0 00 of 4 1.72None
Whole fly0 00 of 4

Looking for FBgn0052792. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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