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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052801 through 18771 annotations produced 1 hits



(CG32801):

Annotation Number : CG32801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052801
Gbrowse : chrX:1796184-1796820 (-) // 100.0 //
Probeset : 1631669_at
Accessions : protein= NP_726776;, nucleotide= NM_166913;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004571 // mannosyl-oligosaccharide 1
FlyMine data for FBgn0052801.
BioGrid reports that CG32801 interacts with CG4770 CG9426 .
VDRC has 3 RNAi stocks for FBgn0052801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 13 of 4 1.10None
Head12 ± 14 of 4 1.30None
Eye13 ± 21 of 4 1.34None
Thoracicoabdominal ganglion18 ± 23 of 4 1.80Up
Salivary gland26 ± 33 of 4 2.57Up
Crop8 ± 11 of 4 0.80None
Midgut12 ± 12 of 4 1.20None
Tubule8 ± 12 of 4 0.80Down
Hindgut9 ± 10 of 4 0.90None
Heart11 ± 03 of 4 1.17None
Fat body12 ± 102 of 4 1.23None
Ovary6 ± 12 of 4 0.70Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands14 ± 22 of 4 1.40None
Virgin spermatheca5 ± 11 of 4 0.54Down
Mated spermatheca7 ± 00 of 4 0.74Down
Adult carcass17 ± 33 of 4 1.70None
Larval CNS15 ± 34 of 4 1.49Up
Larval Salivary gland10 ± 20 of 4 1.06None
Larval midgut6 ± 21 of 4 0.63None
Larval tubule6 ± 11 of 4 0.60None
Larval hindgut5 ± 10 of 4 0.52Down
Larval fat body10 ± 22 of 4 1.00None
Larval trachea9 ± 31 of 4 0.91None
Larval carcass5 ± 11 of 4 0.56None
S2 cells (growing)25 ± 14 of 4 2.46Up
Whole fly10 ± 04 of 4

Looking for FBgn0052801. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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