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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052806 through 18771 annotations produced 2 hits



(CG32806):

Annotation Number : CG32806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052806
Gbrowse : chrX:1683622-1684449 (+) // 100.0 //
Probeset : 1625062_a_at
Accessions : protein= NP_726762; /// NP_726763;, nucleotide= NM_166904; /// NM_166905;
FlyMine data for FBgn0052806.
VDRC has 1 RNAi stocks for FBgn0052806 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland10 ± 40 of 4 0.21Down
Crop4 ± 20 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 20 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis501 ± 104 of 4 9.70Up
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.06Down
Mated spermatheca2 ± 10 of 4 0.05Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland5 ± 10 of 4 0.11Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body61 ± 283 of 4 1.20None
Larval trachea6 ± 61 of 4 0.12Down
Larval carcass3 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly51 ± 54 of 4



(CG32806):

Annotation Number : CG32806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052806
Gbrowse : chrX:1683622-1684449 (+) // 100.0 //
Probeset : 1628620_at
Accessions : protein= NP_726762; /// NP_726763;, nucleotide= NM_166904; /// NM_166905;
FlyMine data for FBgn0052806.
VDRC has 1 RNAi stocks for FBgn0052806 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye3 ± 20 of 4 0.11Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.21Down
Crop2 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 20 of 4 0.09Down
Fat body2 ± 10 of 4 0.06Down
Ovary2 ± 00 of 4 0.10Down
Testis441 ± 144 of 412.80Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.06Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass8 ± 40 of 4 0.30Down
Larval CNS2 ± 00 of 4 0.06Down
Larval Salivary gland2 ± 00 of 4 0.08Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.06Down
Larval fat body45 ± 251 of 4 1.30None
Larval trachea6 ± 31 of 4 0.18Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly34 ± 14 of 4

Looking for FBgn0052806. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime