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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052808 through 18771 annotations produced 1 hits



(CG32808):

Annotation Number : CG32808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052808
Gbrowse : chrX:1362762-1363679 (-) // 100.0 //
Probeset : 1638002_at
Accessions : protein= NP_726740;, nucleotide= NM_166886;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052808.
Homophila reports that CG32808 is a close match (1e-13) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 1 RNAi stocks for FBgn0052808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 14 of 4 7.80Up
Head12 ± 21 of 4 3.00Up
Eye8 ± 11 of 4 2.09None
Thoracicoabdominal ganglion25 ± 03 of 4 6.30Up
Salivary gland6 ± 40 of 4 1.51None
Crop0 ± 00 of 4 0.20None
Midgut3 ± 10 of 4 0.80None
Tubule1 ± 00 of 4 0.40Down
Hindgut2 ± 00 of 4 0.50None
Heart1 ± 00 of 4 0.46None
Fat body1 ± 00 of 4 0.28None
Ovary1 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.40None
Male accessory glands3 ± 00 of 4 1.00None
Virgin spermatheca2 ± 10 of 4 0.62None
Mated spermatheca3 ± 10 of 4 0.86None
Adult carcass3 ± 10 of 4 0.90None
Larval CNS12 ± 32 of 4 2.98Up
Larval Salivary gland5 ± 10 of 4 1.46None
Larval midgut4 ± 10 of 4 1.13None
Larval tubule3 ± 10 of 4 0.90None
Larval hindgut4 ± 10 of 4 1.09None
Larval fat body9 ± 20 of 4 2.30None
Larval trachea14 ± 52 of 4 3.66Up
Larval carcass3 ± 10 of 4 0.78None
S2 cells (growing)3 ± 10 of 4 0.76None
Whole fly4 ± 10 of 4

Looking for FBgn0052808. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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