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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052813 through 18771 annotations produced 1 hits



(CG32813):

Annotation Number : CG32813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052813
Gbrowse : chrX:1274948-1286884 (+) // 100.0 //
Probeset : 1637625_s_at
Accessions : protein= NP_569909; /// NP_726733; /// NP_726734; /// NP_726735; /// NP_726736; /// NP_726737;, nucleotide= NM_130553; /// NM_166881; /// NM_166882; /// NM_166883; /// NM_166884; /// NM_166885;
FlyMine data for FBgn0052813.
BDGP gene expression has embryonic in situ data for CG32813: 18 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0052813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 134 of 4 2.30Up
Head69 14 of 4 0.70Down
Eye39 34 of 4 0.42Down
Thoracicoabdominal ganglion194 64 of 4 2.10Up
Salivary gland352 214 of 4 3.75Up
Crop291 104 of 4 3.10Up
Midgut406 164 of 4 4.30Up
Tubule452 204 of 4 4.80Up
Hindgut214 24 of 4 2.30Up
Heart198 104 of 4 2.11Up
Fat body57 164 of 4 0.61Down
Ovary17 14 of 4 0.20Down
Testis24 24 of 4 0.30Down
Male accessory glands329 144 of 4 3.50Up
Virgin spermatheca80 84 of 4 0.86None
Mated spermatheca83 144 of 4 0.89None
Adult carcass141 14 of 4 1.50Up
Larval CNS145 74 of 4 1.55Up
Larval Salivary gland225 74 of 4 2.41Up
Larval midgut387 154 of 4 4.12Up
Larval tubule371 74 of 4 4.00Up
Larval hindgut146 14 of 4 1.56Up
Larval fat body10 32 of 4 0.10Down
Larval trachea33 84 of 4 0.35Down
Larval carcass139 94 of 4 1.49Up
S2 cells (growing)52 24 of 4 0.56Down
Whole fly93 24 of 4

Looking for FBgn0052813. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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