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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052814 through 18771 annotations produced 1 hits



():

Annotation Number : CG32814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:914906-920736 (-) // 100.0 //
Probeset : 1639237_at
Accessions : protein= NP_569879;, nucleotide= NM_130523;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.60None
Head1 ± 00 of 4 0.70None
Eye0 ± 00 of 4 0.63None
Thoracicoabdominal ganglion3 ± 00 of 4 2.00None
Salivary gland4 ± 10 of 4 3.03None
Crop5 ± 30 of 4 3.50None
Midgut1 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 1.30None
Hindgut3 ± 10 of 4 2.40None
Heart2 ± 10 of 4 1.51None
Fat body2 ± 10 of 4 1.66None
Ovary2 ± 00 of 4 1.90None
Testis2 ± 00 of 4 1.60None
Male accessory glands2 ± 00 of 4 1.60Up
Virgin spermatheca1 ± 00 of 4 0.86None
Mated spermatheca2 ± 00 of 4 1.34None
Adult carcass10 ± 60 of 4 6.80None
Larval CNS1 ± 00 of 4 0.86None
Larval Salivary gland3 ± 10 of 4 2.25None
Larval midgut3 ± 00 of 4 2.00None
Larval tubule1 ± 00 of 4 1.10None
Larval hindgut4 ± 10 of 4 2.73None
Larval fat body2 ± 00 of 4 1.40None
Larval trachea2 ± 10 of 4 1.80None
Larval carcass5 ± 20 of 4 3.58None
S2 cells (growing)4 ± 10 of 4 3.32None
Whole fly1 ± 00 of 4

Looking for FBgn0052814. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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