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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052815 through 18771 annotations produced 1 hits


Annotation Number : CG32815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052815
Gbrowse : chrX:826498-828792 (+) // 100.0 //
Probeset : 1634236_at
Accessions : protein= NP_726709;, nucleotide= NM_166865;
FlyMine data for FBgn0052815.
VDRC has 4 RNAi stocks for FBgn0052815 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 34 of 437.10Up
Head1 00 of 4 1.30None
Eye5 30 of 4 4.19None
Thoracicoabdominal ganglion23 33 of 419.70Up
Salivary gland2 10 of 4 2.31None
Crop1 00 of 4 1.00None
Midgut1 00 of 4 1.20None
Tubule0 00 of 4 0.70Down
Hindgut1 00 of 4 0.80None
Heart3 00 of 4 2.71None
Fat body2 00 of 4 1.63Up
Ovary0 00 of 4 0.60Down
Testis1 00 of 4 0.90None
Male accessory glands1 00 of 4 1.30None
Virgin spermatheca1 00 of 4 0.88None
Mated spermatheca1 00 of 4 1.60None
Adult carcass3 00 of 4 2.60None
Larval CNS4 20 of 4 3.96None
Larval Salivary gland1 00 of 4 0.88None
Larval midgut3 00 of 4 3.13Up
Larval tubule0 00 of 4 0.70None
Larval hindgut1 00 of 4 1.10None
Larval fat body1 00 of 4 1.60None
Larval trachea1 00 of 4 1.35None
Larval carcass1 00 of 4 1.21None
S2 cells (growing)1 00 of 4 1.40None
Whole fly1 00 of 4

Looking for FBgn0052815. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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