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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052817 through 18771 annotations produced 1 hits



/// (CG3176 /// CG32817):

Annotation Number : CG3176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029524 /// FBgn0052817
Gbrowse : chrX:375968-376691 (+) // 99.05 // /// chrX:373480-374200 (+) // 97.9 // /// chrUextra:2870221-2870921 (+) // 94.66 //
Probeset : 1632762_s_at
Accessions : protein= NP_001162629; /// NP_569842; /// NP_726668;, nucleotide= NM_001169158; /// NM_130486; /// NM_166842;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029524 /// FBgn0052817.
BioGrid reports that CG3176 interacts with CG9099 CG6380 CG9975 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 34 of 4 2.00Up
Head53 ± 34 of 4 2.00Up
Eye101 ± 54 of 4 3.85Up
Thoracicoabdominal ganglion37 ± 24 of 4 1.40Up
Salivary gland29 ± 34 of 4 1.13None
Crop67 ± 34 of 4 2.60Up
Midgut55 ± 44 of 4 2.10Up
Tubule12 ± 23 of 4 0.50Down
Hindgut56 ± 34 of 4 2.10Up
Heart236 ± 154 of 4 9.01Up
Fat body25 ± 44 of 4 0.97None
Ovary25 ± 24 of 4 1.00None
Testis120 ± 24 of 4 4.60Up
Male accessory glands45 ± 24 of 4 1.70Up
Virgin spermatheca28 ± 24 of 4 1.09None
Mated spermatheca29 ± 34 of 4 1.11None
Adult carcass33 ± 34 of 4 1.30None
Larval CNS85 ± 54 of 4 3.23Up
Larval Salivary gland29 ± 34 of 4 1.12None
Larval midgut48 ± 44 of 4 1.85Up
Larval tubule21 ± 14 of 4 0.80None
Larval hindgut64 ± 54 of 4 2.45Up
Larval fat body34 ± 64 of 4 1.30None
Larval trachea49 ± 144 of 4 1.90Up
Larval carcass45 ± 34 of 4 1.74Up
S2 cells (growing)251 ± 44 of 4 9.57Up
Whole fly26 ± 14 of 4

Looking for FBgn0052817. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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