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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052821 through 18771 annotations produced 1 hits



(CG32821):

Annotation Number : CG32821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052821
Gbrowse : chrUextra:23745446-23745874 (-) // 100.0 // /// chrUextra:322985-323413 (-) // 97.88 // /// chrX:19804308-19804736 (-) // 100.0 // /// chrX:19809472-19809900 (-) // 100.0 // /// chrX:19833183-19833611 (-) // 97.88 // /// chrX:19823367-19823795 (-) // 97.58 // /// chrX:21027390-21027818 (-) // 90.3 //
Probeset : 1634986_at
Accessions : protein= NP_728310;, nucleotide= NM_167689;
FlyMine data for FBgn0052821.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 4.70None
Head2 10 of 4 2.00None
Eye3 10 of 4 2.71None
Thoracicoabdominal ganglion4 10 of 4 3.80None
Salivary gland3 10 of 4 3.44None
Crop3 20 of 4 3.40None
Midgut1 00 of 4 1.60None
Tubule2 00 of 4 2.20Up
Hindgut2 10 of 4 2.50None
Heart1 00 of 4 1.73None
Fat body3 30 of 4 3.31None
Ovary2 10 of 4 1.90None
Testis5 00 of 4 5.10Up
Male accessory glands1 00 of 4 1.70None
Virgin spermatheca1 00 of 4 1.64None
Mated spermatheca2 00 of 4 2.04None
Adult carcass1 00 of 4 1.20None
Larval CNS4 20 of 4 3.89None
Larval Salivary gland2 10 of 4 2.53None
Larval midgut0 00 of 4 0.51None
Larval tubule3 10 of 4 2.90None
Larval hindgut0 00 of 4 0.78None
Larval fat body1 00 of 4 1.60None
Larval trachea4 30 of 4 4.18None
Larval carcass0 00 of 4 0.69None
S2 cells (growing)2 00 of 4 1.82None
Whole fly1 00 of 4

Looking for FBgn0052821. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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