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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052823 through 18771 annotations produced 2 hits


Sdic:CG32823 /// Sdic:CG33499 /// dynein (Sdic3 /// Sdic4 /// sw):

Annotation Number : CG18000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003654 /// FBgn0052823 /// FBgn0053499
Gbrowse : chrX:20099186-20107239 (-) // 100.0 // /// chrX:20075753-20080296 (-) // 81.66 // /// chrX:20091312-20095855 (-) // 81.66 // /// chrUextra:530266-531643 (-) // 48.79 //
Probeset : 1628129_a_at
Accessions : protein= NP_477069; /// NP_477070; /// NP_477071; /// NP_477072; /// NP_477073; /// NP_477074; /// NP_477075; /// NP_477076; /// NP_477077; /// NP_477078; /// NP_477079; /// NP_728323; /// NP_996519; /// NP_996521; /// NP_996522;, nucleotide= NM_057721; /// NM_057722; /// NM_057723; /// NM_057724; /// NM_057725; /// NM_057726; /// NM_057727; /// NM_057728; /// NM_057729; /// NM_057730; /// NM_057731; /// NM_167693; /// NM_206796; /// NM_206798; /// NM_206799;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-tracea
FlyMine data for FBgn0003654 /// FBgn0052823 /// FBgn0053499.
Homophila reports that CG18000 is a close match (1e-17) to human gene CILD1;DNAI1;ICS;PCD (NP_036276), a gene associated with Ciliary dyskinesia, primary, 1, 242650 (3);Kartagener syndrome, 244400 (3).
BioGrid reports that CG18000 interacts with CG7229 CG9206 CG9206 CG9206 CG9206 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain770 ± 194 of 4 1.80Up
Head474 ± 194 of 4 1.10None
Eye467 ± 24 of 4 1.09None
Thoracicoabdominal ganglion834 ± 224 of 4 1.90Up
Salivary gland505 ± 254 of 4 1.17None
Crop668 ± 184 of 4 1.60Up
Midgut422 ± 94 of 4 1.00None
Tubule407 ± 224 of 4 0.90None
Hindgut659 ± 314 of 4 1.50Up
Heart384 ± 144 of 4 0.89None
Fat body447 ± 174 of 4 1.04None
Ovary375 ± 64 of 4 0.90None
Testis1596 ± 244 of 4 3.70Up
Male accessory glands274 ± 94 of 4 0.60Down
Virgin spermatheca351 ± 134 of 4 0.82None
Mated spermatheca359 ± 184 of 4 0.84None
Adult carcass371 ± 284 of 4 0.90None
Larval CNS546 ± 134 of 4 1.27None
Larval Salivary gland659 ± 54 of 4 1.53Up
Larval midgut570 ± 204 of 4 1.33Up
Larval tubule826 ± 244 of 4 1.90Up
Larval hindgut1010 ± 254 of 4 2.35Up
Larval fat body668 ± 894 of 4 1.60None
Larval trachea951 ± 624 of 4 2.21Up
Larval carcass815 ± 464 of 4 1.90Up
S2 cells (growing)360 ± 34 of 4 0.84None
Whole fly430 ± 424 of 4


Sdic:CG32823 (Sdic3):

Annotation Number : CG32823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052823
Gbrowse : chrX:20084140-20089193 (-) // 100.0 // /// chrX:20076359-20081506 (-) // 99.62 // /// chrX:20091918-20097053 (-) // 99.57 // /// chrX:20068636-20073634 (-) // 94.24 // /// chrX:20099792-20105976 (-) // 75.79 //
Probeset : 1635695_at
Accessions : protein= NP_728323;, nucleotide= NM_167693;
FlyMine data for FBgn0052823.
Homophila reports that CG32823 is a close match (1e-11) to human gene CILD1;DNAI1;ICS;PCD (NP_036276), a gene associated with Ciliary dyskinesia, primary, 1, 242650 (3);Kartagener syndrome, 244400 (3).
BioGrid reports that CG32823 interacts with CG7229 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.10Down
Head6 ± 00 of 4 0.10Down
Eye5 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland22 ± 30 of 4 0.25Down
Crop5 ± 10 of 4 0.10Down
Midgut14 ± 21 of 4 0.20Down
Tubule5 ± 10 of 4 0.10Down
Hindgut8 ± 20 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body9 ± 50 of 4 0.11Down
Ovary5 ± 10 of 4 0.10Down
Testis1001 ± 154 of 411.10Up
Male accessory glands11 ± 21 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass11 ± 30 of 4 0.10Down
Larval CNS8 ± 20 of 4 0.10Down
Larval Salivary gland8 ± 21 of 4 0.10Down
Larval midgut9 ± 22 of 4 0.11Down
Larval tubule6 ± 00 of 4 0.10Down
Larval hindgut7 ± 01 of 4 0.08Down
Larval fat body169 ± 864 of 4 1.90None
Larval trachea7 ± 52 of 4 0.09Down
Larval carcass8 ± 10 of 4 0.10Down
S2 cells (growing)6 ± 11 of 4 0.08Down
Whole fly90 ± 54 of 4

Looking for FBgn0052823. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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