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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052833 through 18771 annotations produced 1 hits


(CG32833):

Annotation Number : CG32833
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052833
Gbrowse : chr2R:18871788-18872837 (-) // 100.0 //
Probeset : 1626373_at
Accessions : protein= NP_726278;, nucleotide= NM_166581;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052833.
Homophila reports that CG32833 is a close match (4e-12) to human gene KLK3;KLKB1 (NP_000883), a gene associated with Fletcher factor deficiency (1);Prekallikrein deficiency (3).
VDRC has 1 RNAi stocks for FBgn0052833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head6 ± 02 of 4 0.20Down
Eye3 ± 11 of 4 0.10Down
Thoracicoabdominal ganglion3 ± 01 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.20Down
Crop4 ± 11 of 4 0.10Down
Midgut8 ± 01 of 4 0.20Down
Tubule5 ± 01 of 4 0.10Down
Hindgut6 ± 01 of 4 0.20Down
Heart2 ± 00 of 4 0.06Down
Fat body3 ± 20 of 4 0.10Down
Ovary3 ± 01 of 4 0.10Down
Testis8 ± 32 of 4 0.20Down
Male accessory glands4622 ± 524 of 4117.40Up
Virgin spermatheca6 ± 02 of 4 0.16Down
Mated spermatheca7 ± 22 of 4 0.18Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS2 ± 00 of 4 0.06Down
Larval Salivary gland7 ± 10 of 4 0.19Down
Larval midgut5 ± 10 of 4 0.13Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut3 ± 11 of 4 0.08Down
Larval fat body11 ± 12 of 4 0.30Down
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)7 ± 03 of 4 0.19Down
Whole fly39 ± 54 of 4

Looking for FBgn0052833. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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