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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052834 through 18771 annotations produced 1 hits


(CG32834):

Annotation Number : CG32834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052834
Gbrowse : chr2R:18870854-18871798 (-) // 100.0 //
Probeset : 1641292_at
Accessions : protein= NP_726277;, nucleotide= NM_166580;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052834.
Homophila reports that CG32834 is a close match (3e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
VDRC has 3 RNAi stocks for FBgn0052834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.03Down
Fat body6 ± 30 of 4 0.07Down
Ovary3 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca2323 ± 2564 of 425.57Up
Mated spermatheca2617 ± 4134 of 428.80Up
Adult carcass21 ± 122 of 4 0.20Down
Larval CNS3 ± 30 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut9 ± 20 of 4 0.10Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.05Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass5 ± 00 of 4 0.06Down
S2 cells (growing)9 ± 01 of 4 0.10Down
Whole fly90 ± 54 of 4

Looking for FBgn0052834. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime