FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052850 through 18771 annotations produced 2 hits

CG32850 ():

Annotation Number : Transposon.97
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 318246
Gbrowse :
Probeset : 1636015_s_at
Accessions : protein= NM_166753;, nucleotide= FBgn0052850
Pathway : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for 318246.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	316 ± 26	4 of 4	3.60	Up
Head	408 ± 38	4 of 4	4.70	Up
Eye	1027 ± 53	4 of 4	11.72	Up
Thoracicoabdominal ganglion	215 ± 16	4 of 4	2.50	Up
Salivary gland	84 ± 7	4 of 4	0.97	None
Crop	48 ± 10	4 of 4	0.50	None
Midgut	75 ± 7	4 of 4	0.90	None
Tubule	9 ± 1	2 of 4	0.10	Down
Hindgut	1154 ± 94	4 of 4	13.20	Up
Heart	112 ± 15	4 of 4	1.28	None
Fat body	382 ± 65	4 of 4	4.36	Up
Ovary	4 ± 0	2 of 4	0.10	Down
Testis	188 ± 42	4 of 4	2.20	None
Male accessory glands	345 ± 19	4 of 4	3.90	Up
Virgin spermatheca	96 ± 9	4 of 4	1.11	None
Mated spermatheca	128 ± 16	4 of 4	1.46	None
Adult carcass	130 ± 13	4 of 4	1.50	None
Larval CNS	166 ± 46	4 of 4	1.90	Up
Larval Salivary gland	17 ± 3	4 of 4	0.19	Down
Larval midgut	7 ± 1	3 of 4	0.09	Down
Larval tubule	13 ± 1	4 of 4	0.20	Down
Larval hindgut	28 ± 8	4 of 4	0.33	Down
Larval fat body	35 ± 10	4 of 4	0.40	None
Larval trachea	31 ± 25	4 of 4	0.36	None
Larval carcass	9 ± 0	4 of 4	0.11	Down
S2 cells (growing)	2676 ± 63	4 of 4	30.54	Up
Whole fly	87 ± 18	4 of 4

(CG32850):

Annotation Number : CG32850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052850
Gbrowse : chr4:335571-342013 (+) // 100.0 // /// chr3L:14818270-14819629 (+) // 58.91 // /// chr3R:3555240-3556582 (+) // 58.25 // /// chr2RHet:717072-718412 (-) // 58.21 // /// chr2R:1280452-1281786 (-) // 57.95 // /// chr3L:18710467-18711810 (-) // 58.3 // /// chrX:21525224-21526574 (-) // 58.38 // /// chrX:1855516-1856856 (-) // 58.12 // /// chrX:11212106-11213440 (-) // 57.47 //
Probeset : 1641464_s_at
Accessions : protein= NP_726563;, nucleotide= NM_166753;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0052850.
TRiP has 1 RNAi stocks for FBgn0052850 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	517 ± 38	4 of 4	5.90	Up
Head	363 ± 27	4 of 4	4.10	Up
Eye	1221 ± 101	4 of 4	13.82	Up
Thoracicoabdominal ganglion	322 ± 34	4 of 4	3.60	Up
Salivary gland	56 ± 5	4 of 4	0.63	None
Crop	31 ± 6	4 of 4	0.40	None
Midgut	66 ± 10	4 of 4	0.80	None
Tubule	8 ± 0	1 of 4	0.10	Down
Hindgut	1566 ± 90	4 of 4	17.70	Up
Heart	110 ± 10	4 of 4	1.25	None
Fat body	138 ± 31	4 of 4	1.57	None
Ovary	7 ± 1	2 of 4	0.10	None
Testis	21 ± 3	3 of 4	0.20	None
Male accessory glands	42 ± 6	4 of 4	0.50	None
Virgin spermatheca	33 ± 3	4 of 4	0.38	None
Mated spermatheca	52 ± 9	4 of 4	0.59	None
Adult carcass	64 ± 11	4 of 4	0.70	None
Larval CNS	74 ± 20	4 of 4	0.85	None
Larval Salivary gland	11 ± 1	2 of 4	0.13	None
Larval midgut	8 ± 1	0 of 4	0.10	None
Larval tubule	10 ± 0	4 of 4	0.10	None
Larval hindgut	18 ± 2	4 of 4	0.21	None
Larval fat body	16 ± 3	2 of 4	0.20	None
Larval trachea	24 ± 15	4 of 4	0.27	None
Larval carcass	9 ± 0	1 of 4	0.10	None
S2 cells (growing)	999 ± 18	4 of 4	11.31	Up
Whole fly	88 ± 26	4 of 4

Looking for FBgn0052850. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720