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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052856 through 18771 annotations produced 1 hits



(CG32856):

Annotation Number : CG32856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052856
Gbrowse : chr3R:11790453-11790906 (-) // 99.01 //
Probeset : 1623641_at
Accessions : protein= NP_732096;, nucleotide= NM_169692;
FlyMine data for FBgn0052856.
VDRC has 3 RNAi stocks for FBgn0052856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 44 of 4 1.50Up
Head109 ± 124 of 4 1.30None
Eye61 ± 44 of 4 0.71None
Thoracicoabdominal ganglion97 ± 64 of 4 1.10None
Salivary gland22 ± 34 of 4 0.26Down
Crop64 ± 24 of 4 0.70None
Midgut37 ± 34 of 4 0.40Down
Tubule32 ± 24 of 4 0.40Down
Hindgut64 ± 24 of 4 0.70None
Heart71 ± 84 of 4 0.82None
Fat body51 ± 54 of 4 0.60Down
Ovary98 ± 44 of 4 1.10None
Testis52 ± 14 of 4 0.60Down
Male accessory glands86 ± 64 of 4 1.00None
Virgin spermatheca24 ± 04 of 4 0.28Down
Mated spermatheca37 ± 24 of 4 0.43Down
Adult carcass57 ± 34 of 4 0.70Down
Larval CNS205 ± 194 of 4 2.36Up
Larval Salivary gland47 ± 34 of 4 0.55Down
Larval midgut26 ± 03 of 4 0.30Down
Larval tubule68 ± 44 of 4 0.80None
Larval hindgut52 ± 44 of 4 0.60Down
Larval fat body76 ± 94 of 4 0.90None
Larval trachea126 ± 84 of 4 1.45Up
Larval carcass64 ± 44 of 4 0.74None
S2 cells (growing)199 ± 74 of 4 2.30Up
Whole fly86 ± 84 of 4

Looking for FBgn0052856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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