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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052857 through 18771 annotations produced 1 hits



/// /// (CG32500 /// CG32857 /// CG33502):

Annotation Number : CG32857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052500 /// FBgn0052857 /// FBgn0053502
Gbrowse : chrUextra:372923-373451 (+) // 59.73 // /// chrX:21492718-21494728 (-) // 100.0 // /// chrX:21486626-21488620 (-) // 100.0 // /// chrX:21480534-21482528 (-) // 100.0 //
Probeset : 1624571_s_at
Accessions : protein= NP_728443; /// NP_728447; /// NP_996529;, nucleotide= NM_167766; /// NM_167770; /// NM_206806;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : "0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding
FlyMine data for FBgn0052500 /// FBgn0052857 /// FBgn0053502.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain443 ± 64 of 4 1.30Up
Head376 ± 104 of 4 1.10None
Eye498 ± 124 of 4 1.48Up
Thoracicoabdominal ganglion466 ± 124 of 4 1.40Up
Salivary gland487 ± 34 of 4 1.45Up
Crop257 ± 44 of 4 0.80Down
Midgut332 ± 124 of 4 1.00None
Tubule305 ± 144 of 4 0.90Down
Hindgut357 ± 104 of 4 1.10None
Heart346 ± 204 of 4 1.03None
Fat body213 ± 254 of 4 0.63Down
Ovary326 ± 44 of 4 1.00None
Testis180 ± 84 of 4 0.50Down
Male accessory glands226 ± 84 of 4 0.70Down
Virgin spermatheca251 ± 124 of 4 0.75Down
Mated spermatheca210 ± 134 of 4 0.63Down
Adult carcass548 ± 124 of 4 1.60Up
Larval CNS179 ± 124 of 4 0.53Down
Larval Salivary gland159 ± 74 of 4 0.48Down
Larval midgut186 ± 84 of 4 0.55Down
Larval tubule321 ± 54 of 4 1.00None
Larval hindgut181 ± 114 of 4 0.54Down
Larval fat body208 ± 104 of 4 0.60Down
Larval trachea198 ± 224 of 4 0.59Down
Larval carcass178 ± 144 of 4 0.53Down
S2 cells (growing)414 ± 74 of 4 1.23Up
Whole fly336 ± 134 of 4

Looking for FBgn0052857. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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