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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052944 through 18771 annotations produced 1 hits



(CG32944):

Annotation Number : CG32944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052944
Gbrowse : chr3R:233158-241195 (-) // 100.0 //
Probeset : 1633632_at
Accessions : protein= NP_001036666; /// NP_788574;, nucleotide= NM_001043201; /// NM_176397;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0052944.
Homophila reports that CG32944 is a close match (6e-14) to human gene CASK;MICPCH (NP_003679), a gene associated with Mental retardation and microcephaly with pontine and cerebellar hypoplasia, 300749 (3).
BioGrid reports that CG32944 interacts with CG6459 .
TRiP has 1 RNAi stocks for FBgn0052944 available for purchase.
VDRC has 4 RNAi stocks for FBgn0052944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 ± 104 of 419.10Up
Head19 ± 14 of 4 2.60Up
Eye5 ± 00 of 4 0.69None
Thoracicoabdominal ganglion139 ± 34 of 418.40Up
Salivary gland12 ± 40 of 4 1.63None
Crop3 ± 10 of 4 0.50None
Midgut2 ± 00 of 4 0.30Down
Tubule2 ± 00 of 4 0.30Down
Hindgut2 ± 00 of 4 0.30Down
Heart4 ± 10 of 4 0.62None
Fat body4 ± 40 of 4 0.54None
Ovary0 ± 00 of 4 0.10Down
Testis27 ± 14 of 4 3.60Up
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca4 ± 10 of 4 0.55None
Mated spermatheca2 ± 00 of 4 0.33Down
Adult carcass10 ± 20 of 4 1.30None
Larval CNS55 ± 34 of 4 7.29Up
Larval Salivary gland1 ± 00 of 4 0.24Down
Larval midgut5 ± 10 of 4 0.65None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.38Down
Larval fat body6 ± 31 of 4 0.80None
Larval trachea2 ± 20 of 4 0.30Down
Larval carcass10 ± 10 of 4 1.41None
S2 cells (growing)1 ± 00 of 4 0.25Down
Whole fly7 ± 10 of 4

Looking for FBgn0052944. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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