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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052971 through 18771 annotations produced 1 hits



(CG32971):

Annotation Number : CG32971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052971
Gbrowse : chr2L:14277479-14277917 (+) // 100.0 //
Probeset : 1638853_at
Accessions : protein= NP_001137823; /// NP_001137824; /// NP_788052;, nucleotide= NM_001144351; /// NM_001144352; /// NM_176038;
Pathway : 0016592 // mediator complex // inferred from electronic annotation
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation
FlyMine data for FBgn0052971.
VDRC has 2 RNAi stocks for FBgn0052971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye4 21 of 4 0.16Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland5 20 of 4 0.20Down
Crop6 30 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut2 10 of 4 0.10Down
Heart4 00 of 4 0.16Down
Fat body8 10 of 4 0.31Down
Ovary2 00 of 4 0.10Down
Testis391 134 of 415.20Up
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.17Down
Mated spermatheca6 10 of 4 0.24Down
Adult carcass1 00 of 4 0.10Down
Larval CNS5 13 of 4 0.22Down
Larval Salivary gland7 30 of 4 0.30Down
Larval midgut3 10 of 4 0.13Down
Larval tubule5 00 of 4 0.20Down
Larval hindgut5 00 of 4 0.19Down
Larval fat body76 194 of 4 3.00None
Larval trachea6 51 of 4 0.27Down
Larval carcass3 00 of 4 0.13Down
S2 cells (growing)3 10 of 4 0.14Down
Whole fly25 24 of 4

Looking for FBgn0052971. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime