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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052982 through 18771 annotations produced 3 hits



(CG32982):

Annotation Number : CG32982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052982
Gbrowse : chr2L:9125750-9163716 (+) // 100.0 //
Probeset : 1634315_a_at
Accessions : protein= NP_001036349; /// NP_001162916; /// NP_788015; /// NP_788016;, nucleotide= NM_001042884; /// NM_001169445; /// NM_176001; /// NM_176002;
FlyMine data for FBgn0052982.
BDGP gene expression has embryonic in situ data for CG32982: 30 pix of staining in 23 body parts.
VDRC has 2 RNAi stocks for FBgn0052982 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 44 of 4 5.90Up
Head61 44 of 4 2.30Up
Eye45 14 of 4 1.69Up
Thoracicoabdominal ganglion251 54 of 4 9.40Up
Salivary gland33 41 of 4 1.26None
Crop150 44 of 4 5.70Up
Midgut38 24 of 4 1.50Up
Tubule23 51 of 4 0.90None
Hindgut80 44 of 4 3.00Up
Heart42 44 of 4 1.58Up
Fat body21 30 of 4 0.81None
Ovary6 10 of 4 0.30Down
Testis20 53 of 4 0.80None
Male accessory glands23 22 of 4 0.90None
Virgin spermatheca24 20 of 4 0.91None
Mated spermatheca31 21 of 4 1.17None
Adult carcass53 34 of 4 2.00Up
Larval CNS36 24 of 4 1.37Up
Larval Salivary gland13 20 of 4 0.52Down
Larval midgut37 30 of 4 1.39None
Larval tubule24 34 of 4 0.90None
Larval hindgut77 74 of 4 2.90Up
Larval fat body23 91 of 4 0.90None
Larval trachea117 204 of 4 4.39Up
Larval carcass85 154 of 4 3.21Up
S2 cells (growing)58 74 of 4 2.18Up
Whole fly26 23 of 4



(CG32982):

Annotation Number : HDC01575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052982
Gbrowse : chr2L:9133861-9135888 (+) // 100.0 //
Probeset : 1636907_at
Accessions : protein= NP_001036349; /// NP_001162916; /// NP_788015; /// NP_788016;, nucleotide= NM_001042884; /// NM_001169445; /// NM_176001; /// NM_176002;
FlyMine data for FBgn0052982.
BDGP gene expression has embryonic in situ data for CG32982: 30 pix of staining in 23 body parts.
VDRC has 2 RNAi stocks for FBgn0052982 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 4.20Up
Head6 10 of 4 1.00None
Eye4 11 of 4 0.80None
Thoracicoabdominal ganglion20 24 of 4 3.40Up
Salivary gland11 30 of 4 1.90None
Crop12 51 of 4 2.00None
Midgut10 10 of 4 1.70None
Tubule7 00 of 4 1.20None
Hindgut10 20 of 4 1.70None
Heart9 14 of 4 1.58None
Fat body6 20 of 4 0.99None
Ovary2 10 of 4 0.40None
Testis6 10 of 4 1.00None
Male accessory glands8 20 of 4 1.30None
Virgin spermatheca9 20 of 4 1.50None
Mated spermatheca12 20 of 4 2.06None
Adult carcass15 10 of 4 2.50Up
Larval CNS5 20 of 4 0.87None
Larval Salivary gland3 10 of 4 0.62None
Larval midgut4 10 of 4 0.79None
Larval tubule5 10 of 4 0.90None
Larval hindgut6 10 of 4 0.97None
Larval fat body9 20 of 4 1.60None
Larval trachea14 31 of 4 2.36Up
Larval carcass7 10 of 4 1.24None
S2 cells (growing)10 10 of 4 1.66None
Whole fly6 20 of 4



(CG32982):

Annotation Number : CG32982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052982
Gbrowse : chr2L:9151200-9163727 (+) // 100.0 //
Probeset : 1634406_at
Accessions : protein= NP_001036349; /// NP_001162916; /// NP_788015; /// NP_788016;, nucleotide= NM_001042884; /// NM_001169445; /// NM_176001; /// NM_176002;
FlyMine data for FBgn0052982.
BDGP gene expression has embryonic in situ data for CG32982: 30 pix of staining in 23 body parts.
VDRC has 2 RNAi stocks for FBgn0052982 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 34 of 4 2.10Up
Head20 23 of 4 1.50None
Eye20 14 of 4 1.45None
Thoracicoabdominal ganglion19 24 of 4 1.40None
Salivary gland12 10 of 4 0.88None
Crop85 54 of 4 6.10Up
Midgut40 24 of 4 2.90Up
Tubule15 21 of 4 1.10None
Hindgut54 34 of 4 3.90Up
Heart16 23 of 4 1.15None
Fat body11 41 of 4 0.84None
Ovary4 00 of 4 0.30None
Testis13 32 of 4 0.90None
Male accessory glands17 52 of 4 1.30None
Virgin spermatheca7 20 of 4 0.52None
Mated spermatheca10 00 of 4 0.72None
Adult carcass25 12 of 4 1.80None
Larval CNS13 11 of 4 0.94None
Larval Salivary gland13 30 of 4 0.93None
Larval midgut35 34 of 4 2.53Up
Larval tubule18 12 of 4 1.30None
Larval hindgut65 34 of 4 4.66Up
Larval fat body16 10 of 4 1.10None
Larval trachea35 64 of 4 2.54Up
Larval carcass74 64 of 4 5.35Up
S2 cells (growing)43 34 of 4 3.14Up
Whole fly14 42 of 4

Looking for FBgn0052982. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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