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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052988 through 18771 annotations produced 1 hits



(CG32988):

Annotation Number : CG32988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052988
Gbrowse : chr2L:8864903-8865671 (+) // 100.0 //
Probeset : 1639128_at
Accessions : protein= NP_788008;, nucleotide= NM_175994;
FlyMine data for FBgn0052988.
VDRC has 3 RNAi stocks for FBgn0052988 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20Down
Head3 10 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion5 10 of 4 0.20Down
Salivary gland10 40 of 4 0.46Down
Crop6 00 of 4 0.30Down
Midgut4 10 of 4 0.20Down
Tubule6 11 of 4 0.30Down
Hindgut8 11 of 4 0.30Down
Heart4 00 of 4 0.21Down
Fat body6 22 of 4 0.26Down
Ovary1 00 of 4 0.10Down
Testis295 154 of 412.50Up
Male accessory glands7 20 of 4 0.30Down
Virgin spermatheca6 11 of 4 0.27Down
Mated spermatheca5 00 of 4 0.22Down
Adult carcass5 20 of 4 0.20Down
Larval CNS4 41 of 4 0.19Down
Larval Salivary gland4 20 of 4 0.19Down
Larval midgut7 11 of 4 0.30Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut4 10 of 4 0.19Down
Larval fat body31 153 of 4 1.30None
Larval trachea3 20 of 4 0.14Down
Larval carcass5 10 of 4 0.22Down
S2 cells (growing)5 00 of 4 0.21Down
Whole fly23 14 of 4

Looking for FBgn0052988. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime