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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053002 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L27 (mRpL27):

Annotation Number : CG33002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053002
Gbrowse : chr2L:4459003-4459532 (-) // 100.0 //
Probeset : 1640834_at
Accessions : protein= NP_787971;, nucleotide= NM_175957;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0053002.
BioGrid reports that CG33002 interacts with CG8114 CG5893 CG5829 .
VDRC has 5 RNAi stocks for FBgn0053002 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 ± 124 of 4 1.10None
Head181 ± 54 of 4 0.90None
Eye239 ± 174 of 4 1.17None
Thoracicoabdominal ganglion328 ± 144 of 4 1.60Up
Salivary gland173 ± 84 of 4 0.85None
Crop157 ± 74 of 4 0.80Down
Midgut122 ± 94 of 4 0.60Down
Tubule115 ± 44 of 4 0.60Down
Hindgut220 ± 44 of 4 1.10None
Heart217 ± 64 of 4 1.06None
Fat body173 ± 144 of 4 0.84None
Ovary221 ± 44 of 4 1.10None
Testis68 ± 14 of 4 0.30Down
Male accessory glands216 ± 94 of 4 1.10None
Virgin spermatheca154 ± 114 of 4 0.75Down
Mated spermatheca153 ± 74 of 4 0.75Down
Adult carcass245 ± 154 of 4 1.20None
Larval CNS249 ± 194 of 4 1.22Up
Larval Salivary gland180 ± 84 of 4 0.88None
Larval midgut117 ± 94 of 4 0.57Down
Larval tubule93 ± 64 of 4 0.50Down
Larval hindgut176 ± 114 of 4 0.86None
Larval fat body71 ± 34 of 4 0.30Down
Larval trachea243 ± 184 of 4 1.19None
Larval carcass127 ± 124 of 4 0.62Down
S2 cells (growing)168 ± 44 of 4 0.82None
Whole fly205 ± 134 of 4

Looking for FBgn0053002. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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