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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053003 through 18771 annotations produced 1 hits



(CG33003):

Annotation Number : CG33003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053003
Gbrowse : chr2L:4401104-4403091 (+) // 100.0 //
Probeset : 1636897_at
Accessions : protein= NP_001137790; /// NP_787970;, nucleotide= NM_001144318; /// NM_175956;
FlyMine data for FBgn0053003.
VDRC has 1 RNAi stocks for FBgn0053003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 02 of 4 0.80None
Head14 ± 32 of 4 1.30None
Eye5 ± 21 of 4 0.50None
Thoracicoabdominal ganglion11 ± 21 of 4 1.00None
Salivary gland27 ± 73 of 4 2.57None
Crop23 ± 44 of 4 2.20Up
Midgut20 ± 14 of 4 1.90Up
Tubule15 ± 03 of 4 1.40Up
Hindgut24 ± 14 of 4 2.30Up
Heart8 ± 12 of 4 0.82None
Fat body28 ± 14 of 4 2.58Up
Ovary10 ± 32 of 4 1.00None
Testis10 ± 12 of 4 1.00None
Male accessory glands14 ± 41 of 4 1.40None
Virgin spermatheca18 ± 14 of 4 1.71Up
Mated spermatheca13 ± 14 of 4 1.21None
Adult carcass25 ± 14 of 4 2.30Up
Larval CNS9 ± 34 of 4 0.86None
Larval Salivary gland16 ± 34 of 4 1.53None
Larval midgut26 ± 34 of 4 2.45Up
Larval tubule17 ± 24 of 4 1.60None
Larval hindgut14 ± 24 of 4 1.37None
Larval fat body20 ± 34 of 4 1.90Up
Larval trachea8 ± 32 of 4 0.81None
Larval carcass22 ± 24 of 4 2.04Up
S2 cells (growing)19 ± 14 of 4 1.82Up
Whole fly10 ± 14 of 4

Looking for FBgn0053003. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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