FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053013 through 18771 annotations produced 1 hits

(CG33013):

Annotation Number : CG33013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053013
Gbrowse : chr2R:8250983-8253889 (+) // 100.0 //
Probeset : 1637916_at
Accessions : protein= NP_788333;, nucleotide= NM_176153;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation
FlyMine data for FBgn0053013.
VDRC has 1 RNAi stocks for FBgn0053013 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.40	None
Head	1 ± 0	0 of 4	0.30	None
Eye	1 ± 0	0 of 4	0.21	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	17 ± 4	1 of 4	2.68	None
Crop	7 ± 2	0 of 4	1.20	None
Midgut	13 ± 1	0 of 4	2.00	Up
Tubule	92 ± 8	4 of 4	13.90	Up
Hindgut	55 ± 1	4 of 4	8.40	Up
Heart	4 ± 1	0 of 4	0.69	None
Fat body	6 ± 5	0 of 4	0.94	None
Ovary	3 ± 0	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	0.30	None
Male accessory glands	9 ± 1	0 of 4	1.40	None
Virgin spermatheca	3 ± 2	0 of 4	0.57	None
Mated spermatheca	7 ± 0	1 of 4	1.17	None
Adult carcass	3 ± 1	0 of 4	0.50	None
Larval CNS	1 ± 0	0 of 4	0.25	None
Larval Salivary gland	4 ± 1	0 of 4	0.64	None
Larval midgut	86 ± 6	4 of 4	13.14	Up
Larval tubule	581 ± 31	4 of 4	88.20	Up
Larval hindgut	93 ± 12	4 of 4	14.15	Up
Larval fat body	10 ± 2	0 of 4	1.50	None
Larval trachea	1 ± 0	0 of 4	0.17	None
Larval carcass	2 ± 0	0 of 4	0.31	None
S2 cells (growing)	2 ± 0	0 of 4	0.36	None
Whole fly	6 ± 1	0 of 4

Looking for FBgn0053013. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720