FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053017 through 18771 annotations produced 1 hits

(CG33017):

Annotation Number : CG33017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053017
Gbrowse : chr2R:12159816-12164772 (+) // 100.0 //
Probeset : 1640879_at
Accessions : protein= NP_788375;, nucleotide= NM_176195;
FlyMine data for FBgn0053017.
BioGrid reports that CG33017 interacts with CG3683 CG3847 CG3358 CG3661 CG3929 CG3937 CG4196 CG4554 CG4843 CG4863 CG5358 CG5452 CG5481 CG5642 CG6779 CG7113 CG7187 CG7803 CG7940 CG8186 CG8736 CG8907 CG9036 CG9075 CG9083 CG9414 CG9526 CG9850 .
TRiP has 1 RNAi stocks for FBgn0053017 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053017 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.10	Down
Head	6 ± 1	0 of 4	0.20	Down
Eye	2 ± 0	0 of 4	0.08	Down
Thoracicoabdominal ganglion	8 ± 1	0 of 4	0.30	Down
Salivary gland	15 ± 3	0 of 4	0.51	Down
Crop	2 ± 1	0 of 4	0.10	Down
Midgut	14 ± 5	0 of 4	0.50	None
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	5 ± 1	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.11	Down
Fat body	6 ± 2	0 of 4	0.20	Down
Ovary	3 ± 0	0 of 4	0.10	Down
Testis	361 ± 13	4 of 4	11.90	Up
Male accessory glands	11 ± 1	0 of 4	0.40	Down
Virgin spermatheca	5 ± 2	0 of 4	0.18	Down
Mated spermatheca	9 ± 1	0 of 4	0.30	Down
Adult carcass	9 ± 2	0 of 4	0.30	Down
Larval CNS	4 ± 1	0 of 4	0.16	Down
Larval Salivary gland	9 ± 2	1 of 4	0.32	Down
Larval midgut	7 ± 3	0 of 4	0.24	Down
Larval tubule	5 ± 1	0 of 4	0.20	Down
Larval hindgut	4 ± 0	0 of 4	0.16	Down
Larval fat body	26 ± 8	2 of 4	0.90	None
Larval trachea	4 ± 2	0 of 4	0.13	Down
Larval carcass	1 ± 0	0 of 4	0.06	Down
S2 cells (growing)	4 ± 0	0 of 4	0.15	Down
Whole fly	30 ± 2	4 of 4

Looking for FBgn0053017. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720