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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053051 through 18771 annotations produced 1 hits



(CG33051):

Annotation Number : CG33051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053051
Gbrowse : chr3L:17419407-17420169 (-) // 100.0 //
Probeset : 1640480_at
Accessions : protein= NP_788522;, nucleotide= NM_176344;
FlyMine data for FBgn0053051.
VDRC has 2 RNAi stocks for FBgn0053051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 54 of 4 0.90None
Head66 ± 44 of 4 0.70Down
Eye86 ± 24 of 4 0.97None
Thoracicoabdominal ganglion88 ± 34 of 4 1.00None
Salivary gland38 ± 24 of 4 0.43Down
Crop80 ± 34 of 4 0.90None
Midgut75 ± 54 of 4 0.80None
Tubule35 ± 14 of 4 0.40Down
Hindgut43 ± 24 of 4 0.50Down
Heart65 ± 64 of 4 0.73Down
Fat body70 ± 144 of 4 0.78None
Ovary150 ± 64 of 4 1.70Up
Testis27 ± 14 of 4 0.30Down
Male accessory glands185 ± 124 of 4 2.10Up
Virgin spermatheca68 ± 34 of 4 0.76Down
Mated spermatheca77 ± 34 of 4 0.86None
Adult carcass45 ± 34 of 4 0.50Down
Larval CNS190 ± 104 of 4 2.12Up
Larval Salivary gland116 ± 14 of 4 1.29Up
Larval midgut42 ± 54 of 4 0.47Down
Larval tubule40 ± 24 of 4 0.40Down
Larval hindgut49 ± 34 of 4 0.55Down
Larval fat body61 ± 54 of 4 0.70Down
Larval trachea151 ± 184 of 4 1.69Up
Larval carcass83 ± 134 of 4 0.93None
S2 cells (growing)100 ± 54 of 4 1.12None
Whole fly89 ± 44 of 4

Looking for FBgn0053051. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime