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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053052 through 18771 annotations produced 1 hits



/// /// UDP-sugar transporter in 74C (CG32174 /// CG33052 /// frc):

Annotation Number : CG33052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042641 /// FBgn0052174 /// FBgn0053052
Gbrowse : chr3L:17420405-17421931 (-) // 100.0 //
Probeset : 1636541_at
Accessions : protein= NP_001137962; /// NP_524126; /// NP_648977; /// NP_730270; /// NP_788523;, nucleotide= NM_001144490; /// NM_079402; /// NM_140720; /// NM_168732; /// NM_176345;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence
Interpro : 0005457 // GDP-fucose transmembrane transporter activity // inferred from direct assay /// 0005458 // GDP-mannose transm
FlyMine data for FBgn0042641 /// FBgn0052174 /// FBgn0053052.
BioGrid reports that CG33052 interacts with CG7583 CG9573 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 54 of 4 0.70Down
Head79 34 of 4 0.50Down
Eye41 24 of 4 0.27Down
Thoracicoabdominal ganglion88 64 of 4 0.60Down
Salivary gland120 174 of 4 0.79None
Crop115 34 of 4 0.80Down
Midgut85 64 of 4 0.60Down
Tubule51 54 of 4 0.30Down
Hindgut78 24 of 4 0.50Down
Heart92 64 of 4 0.60Down
Fat body88 104 of 4 0.58Down
Ovary312 54 of 4 2.00Up
Testis11 22 of 4 0.10Down
Male accessory glands518 104 of 4 3.40Up
Virgin spermatheca121 84 of 4 0.80None
Mated spermatheca157 74 of 4 1.03None
Adult carcass85 74 of 4 0.60Down
Larval CNS121 84 of 4 0.79None
Larval Salivary gland221 74 of 4 1.45Up
Larval midgut67 04 of 4 0.44Down
Larval tubule58 64 of 4 0.40Down
Larval hindgut79 44 of 4 0.52Down
Larval fat body122 124 of 4 0.80None
Larval trachea114 104 of 4 0.75Down
Larval carcass96 54 of 4 0.63Down
S2 cells (growing)328 44 of 4 2.15Up
Whole fly153 104 of 4

Looking for FBgn0053052. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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