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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053054 through 18771 annotations produced 3 hits



(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190510-21191272 (-) // 100.0 //
Probeset : 1637050_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 04 of 4 0.60Down
Head14 14 of 4 0.40Down
Eye8 13 of 4 0.25Down
Thoracicoabdominal ganglion24 24 of 4 0.80None
Salivary gland53 102 of 4 1.64None
Crop21 02 of 4 0.60None
Midgut20 14 of 4 0.60Down
Tubule19 03 of 4 0.60Down
Hindgut17 24 of 4 0.50Down
Heart11 14 of 4 0.36Down
Fat body27 114 of 4 0.83None
Ovary10 14 of 4 0.30Down
Testis295 194 of 4 9.00Up
Male accessory glands20 12 of 4 0.60Down
Virgin spermatheca55 24 of 4 1.70Up
Mated spermatheca58 74 of 4 1.77Up
Adult carcass26 33 of 4 0.80None
Larval CNS15 24 of 4 0.48Down
Larval Salivary gland14 32 of 4 0.44Down
Larval midgut30 14 of 4 0.94None
Larval tubule18 23 of 4 0.60Down
Larval hindgut17 14 of 4 0.54Down
Larval fat body53 154 of 4 1.60None
Larval trachea11 24 of 4 0.36Down
Larval carcass18 24 of 4 0.56Down
S2 cells (growing)21 14 of 4 0.65None
Whole fly32 34 of 4



(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190581-21195978 (-) // 100.0 //
Probeset : 1628251_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 64 of 4 0.90None
Head160 54 of 4 1.20None
Eye134 84 of 4 0.98None
Thoracicoabdominal ganglion214 154 of 4 1.60Up
Salivary gland702 334 of 4 5.15Up
Crop250 134 of 4 1.80Up
Midgut191 24 of 4 1.40Up
Tubule458 134 of 4 3.40Up
Hindgut331 24 of 4 2.40Up
Heart259 214 of 4 1.91Up
Fat body407 164 of 4 2.99Up
Ovary98 34 of 4 0.70None
Testis591 244 of 4 4.30Up
Male accessory glands216 164 of 4 1.60Up
Virgin spermatheca1800 274 of 413.21Up
Mated spermatheca1974 1094 of 414.48Up
Adult carcass301 334 of 4 2.20Up
Larval CNS136 114 of 4 1.00None
Larval Salivary gland165 144 of 4 1.21None
Larval midgut274 134 of 4 2.01Up
Larval tubule320 124 of 4 2.40Up
Larval hindgut350 114 of 4 2.57Up
Larval fat body275 204 of 4 2.00Up
Larval trachea231 184 of 4 1.69Up
Larval carcass241 204 of 4 1.77Up
S2 cells (growing)326 44 of 4 2.39Up
Whole fly136 124 of 4



(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190581-21195978 (-) // 100.0 //
Probeset : 1625443_a_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 44 of 4 1.00None
Head176 134 of 4 1.30None
Eye165 34 of 4 1.22None
Thoracicoabdominal ganglion171 64 of 4 1.30Up
Salivary gland475 114 of 4 3.50Up
Crop195 64 of 4 1.40Up
Midgut162 84 of 4 1.20None
Tubule197 84 of 4 1.50Up
Hindgut337 44 of 4 2.50Up
Heart237 84 of 4 1.75Up
Fat body374 254 of 4 2.75Up
Ovary67 14 of 4 0.50Down
Testis570 44 of 4 4.20Up
Male accessory glands150 134 of 4 1.10None
Virgin spermatheca293 164 of 4 2.16Up
Mated spermatheca312 64 of 4 2.30Up
Adult carcass241 64 of 4 1.80Up
Larval CNS117 84 of 4 0.86None
Larval Salivary gland160 64 of 4 1.18None
Larval midgut202 64 of 4 1.49Up
Larval tubule252 94 of 4 1.90Up
Larval hindgut198 64 of 4 1.46Up
Larval fat body185 114 of 4 1.40Up
Larval trachea170 154 of 4 1.26None
Larval carcass152 74 of 4 1.12None
S2 cells (growing)281 44 of 4 2.07Up
Whole fly135 114 of 4

Looking for FBgn0053054. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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