FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0053054 through 18771 annotations produced 3 hits

(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190581-21195978 (-) // 100.0 //
Probeset : 1628251_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	123 ± 6	4 of 4	0.90	None
Head	160 ± 5	4 of 4	1.20	None
Eye	134 ± 8	4 of 4	0.98	None
Thoracicoabdominal ganglion	214 ± 15	4 of 4	1.60	Up
Salivary gland	702 ± 33	4 of 4	5.15	Up
Crop	250 ± 13	4 of 4	1.80	Up
Midgut	191 ± 2	4 of 4	1.40	Up
Tubule	458 ± 13	4 of 4	3.40	Up
Hindgut	331 ± 2	4 of 4	2.40	Up
Heart	259 ± 21	4 of 4	1.91	Up
Fat body	407 ± 16	4 of 4	2.99	Up
Ovary	98 ± 3	4 of 4	0.70	None
Testis	591 ± 24	4 of 4	4.30	Up
Male accessory glands	216 ± 16	4 of 4	1.60	Up
Virgin spermatheca	1800 ± 27	4 of 4	13.21	Up
Mated spermatheca	1974 ± 109	4 of 4	14.48	Up
Adult carcass	301 ± 33	4 of 4	2.20	Up
Larval CNS	136 ± 11	4 of 4	1.00	None
Larval Salivary gland	165 ± 14	4 of 4	1.21	None
Larval midgut	274 ± 13	4 of 4	2.01	Up
Larval tubule	320 ± 12	4 of 4	2.40	Up
Larval hindgut	350 ± 11	4 of 4	2.57	Up
Larval fat body	275 ± 20	4 of 4	2.00	Up
Larval trachea	231 ± 18	4 of 4	1.69	Up
Larval carcass	241 ± 20	4 of 4	1.77	Up
S2 cells (growing)	326 ± 4	4 of 4	2.39	Up
Whole fly	136 ± 12	4 of 4

(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190510-21191272 (-) // 100.0 //
Probeset : 1637050_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 0	4 of 4	0.60	Down
Head	14 ± 1	4 of 4	0.40	Down
Eye	8 ± 1	3 of 4	0.25	Down
Thoracicoabdominal ganglion	24 ± 2	4 of 4	0.80	None
Salivary gland	53 ± 10	2 of 4	1.64	None
Crop	21 ± 0	2 of 4	0.60	None
Midgut	20 ± 1	4 of 4	0.60	Down
Tubule	19 ± 0	3 of 4	0.60	Down
Hindgut	17 ± 2	4 of 4	0.50	Down
Heart	11 ± 1	4 of 4	0.36	Down
Fat body	27 ± 11	4 of 4	0.83	None
Ovary	10 ± 1	4 of 4	0.30	Down
Testis	295 ± 19	4 of 4	9.00	Up
Male accessory glands	20 ± 1	2 of 4	0.60	Down
Virgin spermatheca	55 ± 2	4 of 4	1.70	Up
Mated spermatheca	58 ± 7	4 of 4	1.77	Up
Adult carcass	26 ± 3	3 of 4	0.80	None
Larval CNS	15 ± 2	4 of 4	0.48	Down
Larval Salivary gland	14 ± 3	2 of 4	0.44	Down
Larval midgut	30 ± 1	4 of 4	0.94	None
Larval tubule	18 ± 2	3 of 4	0.60	Down
Larval hindgut	17 ± 1	4 of 4	0.54	Down
Larval fat body	53 ± 15	4 of 4	1.60	None
Larval trachea	11 ± 2	4 of 4	0.36	Down
Larval carcass	18 ± 2	4 of 4	0.56	Down
S2 cells (growing)	21 ± 1	4 of 4	0.65	None
Whole fly	32 ± 3	4 of 4

(CG33054):

Annotation Number : CG33054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053054
Gbrowse : chr3L:21190581-21195978 (-) // 100.0 //
Probeset : 1625443_a_at
Accessions : protein= NP_788553; /// NP_788554;, nucleotide= NM_176375; /// NM_176376;
FlyMine data for FBgn0053054.
VDRC has 2 RNAi stocks for FBgn0053054 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	132 ± 4	4 of 4	1.00	None
Head	176 ± 13	4 of 4	1.30	None
Eye	165 ± 3	4 of 4	1.22	None
Thoracicoabdominal ganglion	171 ± 6	4 of 4	1.30	Up
Salivary gland	475 ± 11	4 of 4	3.50	Up
Crop	195 ± 6	4 of 4	1.40	Up
Midgut	162 ± 8	4 of 4	1.20	None
Tubule	197 ± 8	4 of 4	1.50	Up
Hindgut	337 ± 4	4 of 4	2.50	Up
Heart	237 ± 8	4 of 4	1.75	Up
Fat body	374 ± 25	4 of 4	2.75	Up
Ovary	67 ± 1	4 of 4	0.50	Down
Testis	570 ± 4	4 of 4	4.20	Up
Male accessory glands	150 ± 13	4 of 4	1.10	None
Virgin spermatheca	293 ± 16	4 of 4	2.16	Up
Mated spermatheca	312 ± 6	4 of 4	2.30	Up
Adult carcass	241 ± 6	4 of 4	1.80	Up
Larval CNS	117 ± 8	4 of 4	0.86	None
Larval Salivary gland	160 ± 6	4 of 4	1.18	None
Larval midgut	202 ± 6	4 of 4	1.49	Up
Larval tubule	252 ± 9	4 of 4	1.90	Up
Larval hindgut	198 ± 6	4 of 4	1.46	Up
Larval fat body	185 ± 11	4 of 4	1.40	Up
Larval trachea	170 ± 15	4 of 4	1.26	None
Larval carcass	152 ± 7	4 of 4	1.12	None
S2 cells (growing)	281 ± 4	4 of 4	2.07	Up
Whole fly	135 ± 11	4 of 4

Looking for FBgn0053054. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720