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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053060 through 18771 annotations produced 1 hits


Annotation Number : CG33060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053060
Gbrowse : chr3L:16324139-16324867 (+) // 100.0 //
Probeset : 1634811_at
Accessions : protein= NP_788513;, nucleotide= NM_176335;
FlyMine data for FBgn0053060.
VDRC has 1 RNAi stocks for FBgn0053060 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head6 20 of 4 0.10Down
Eye18 31 of 4 0.27Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland12 30 of 4 0.18Down
Crop5 20 of 4 0.10Down
Midgut3 00 of 4 0.00Down
Tubule5 10 of 4 0.10Down
Hindgut5 10 of 4 0.10Down
Heart5 10 of 4 0.08Down
Fat body11 40 of 4 0.17Down
Ovary2 00 of 4 0.00Down
Testis685 114 of 410.00Up
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca3 10 of 4 0.05Down
Adult carcass11 30 of 4 0.20Down
Larval CNS3 10 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut6 20 of 4 0.10Down
Larval tubule7 30 of 4 0.10Down
Larval hindgut14 20 of 4 0.21Down
Larval fat body72 391 of 4 1.10None
Larval trachea7 41 of 4 0.11Down
Larval carcass3 10 of 4 0.06Down
S2 cells (growing)7 20 of 4 0.10Down
Whole fly68 84 of 4

Looking for FBgn0053060. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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