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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053080 through 18771 annotations produced 1 hits



(CG33080):

Annotation Number : CG33080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053080
Gbrowse : chrX:5602593-5611811 (-) // 100.0 //
Probeset : 1632342_a_at
Accessions : protein= NP_788858; /// NP_788859;, nucleotide= NM_176685; /// NM_176686;
Pathway : 0017177 // alpha-glucosidase II complex // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0053080.
BDGP gene expression has embryonic in situ data for CG33080: 16 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0053080 available for purchase.
VDRC has 6 RNAi stocks for FBgn0053080 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain216 ± 134 of 4 1.70None
Head300 ± 154 of 4 2.30Up
Eye220 ± 204 of 4 1.70Up
Thoracicoabdominal ganglion307 ± 114 of 4 2.40Up
Salivary gland1105 ± 444 of 4 8.51Up
Crop15 ± 00 of 4 0.10Down
Midgut302 ± 114 of 4 2.30Up
Tubule676 ± 394 of 4 5.20Up
Hindgut813 ± 14 of 4 6.30Up
Heart359 ± 264 of 4 2.77Up
Fat body563 ± 694 of 4 4.34Up
Ovary17 ± 12 of 4 0.10Down
Testis6 ± 10 of 4 0.10Down
Male accessory glands81 ± 44 of 4 0.60Down
Virgin spermatheca155 ± 64 of 4 1.20None
Mated spermatheca216 ± 224 of 4 1.67Up
Adult carcass320 ± 204 of 4 2.50Up
Larval CNS85 ± 84 of 4 0.66Down
Larval Salivary gland37 ± 34 of 4 0.29Down
Larval midgut423 ± 194 of 4 3.26Up
Larval tubule509 ± 74 of 4 3.90Up
Larval hindgut460 ± 264 of 4 3.54Up
Larval fat body41 ± 54 of 4 0.30Down
Larval trachea65 ± 124 of 4 0.50Down
Larval carcass239 ± 254 of 4 1.85Up
S2 cells (growing)18 ± 12 of 4 0.14Down
Whole fly129 ± 114 of 4

Looking for FBgn0053080. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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