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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053082 through 18771 annotations produced 2 hits



Transcription unit B /// (CG14630 /// CG33082):

Annotation Number : CG14630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014903 /// FBgn0053082
Gbrowse : chrX:925537-927152 (+) // 100.0 //
Probeset : 1625120_at
Accessions : protein= NP_651985; /// NP_788853;, nucleotide= NM_143728; /// NM_176680;
Interpro : 0008336 // gamma-butyrobetaine dioxygenase activity // inferred from sequence or structural similarity /// 0008336 // ga
FlyMine data for FBgn0014903 /// FBgn0053082.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 14 of 4 0.40Down
Head111 ± 124 of 4 1.20None
Eye85 ± 334 of 4 0.93None
Thoracicoabdominal ganglion40 ± 24 of 4 0.40Down
Salivary gland28 ± 32 of 4 0.31Down
Crop20 ± 14 of 4 0.20Down
Midgut903 ± 454 of 4 9.90Up
Tubule33 ± 43 of 4 0.40Down
Hindgut101 ± 64 of 4 1.10None
Heart97 ± 54 of 4 1.06None
Fat body246 ± 914 of 4 2.69Up
Ovary21 ± 24 of 4 0.20Down
Testis6 ± 00 of 4 0.10Down
Male accessory glands27 ± 14 of 4 0.30Down
Virgin spermatheca526 ± 174 of 4 5.75Up
Mated spermatheca142 ± 114 of 4 1.55Up
Adult carcass119 ± 144 of 4 1.30None
Larval CNS44 ± 24 of 4 0.49Down
Larval Salivary gland40 ± 04 of 4 0.45Down
Larval midgut390 ± 234 of 4 4.27Up
Larval tubule16 ± 22 of 4 0.20Down
Larval hindgut90 ± 64 of 4 0.99None
Larval fat body269 ± 184 of 4 2.90Up
Larval trachea48 ± 84 of 4 0.53Down
Larval carcass34 ± 44 of 4 0.38Down
S2 cells (growing)32 ± 14 of 4 0.35Down
Whole fly91 ± 94 of 4



(CG33082):

Annotation Number : CG33082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053082
Gbrowse : chrX:924875-925486 (+) // 100.0 //
Probeset : 1631337_at
Accessions : protein= NP_788853;, nucleotide= NM_176680;
FlyMine data for FBgn0053082.
VDRC has 1 RNAi stocks for FBgn0053082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 24 of 4 1.70None
Head7 ± 30 of 4 0.80None
Eye2 ± 00 of 4 0.28Down
Thoracicoabdominal ganglion13 ± 22 of 4 1.40None
Salivary gland21 ± 51 of 4 2.26None
Crop10 ± 10 of 4 1.10None
Midgut19 ± 10 of 4 2.00Up
Tubule6 ± 10 of 4 0.70Down
Hindgut10 ± 30 of 4 1.10None
Heart2 ± 00 of 4 0.29Down
Fat body7 ± 50 of 4 0.74None
Ovary8 ± 00 of 4 0.90None
Testis5 ± 30 of 4 0.60None
Male accessory glands18 ± 21 of 4 2.00Up
Virgin spermatheca6 ± 10 of 4 0.64None
Mated spermatheca10 ± 21 of 4 1.09None
Adult carcass15 ± 40 of 4 1.60None
Larval CNS15 ± 12 of 4 1.68Up
Larval Salivary gland16 ± 30 of 4 1.71None
Larval midgut11 ± 30 of 4 1.22None
Larval tubule9 ± 20 of 4 1.00None
Larval hindgut7 ± 20 of 4 0.79None
Larval fat body13 ± 20 of 4 1.40None
Larval trachea8 ± 21 of 4 0.89None
Larval carcass17 ± 33 of 4 1.89None
S2 cells (growing)19 ± 10 of 4 2.03Up
Whole fly9 ± 00 of 4

Looking for FBgn0053082. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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