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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053087 through 18771 annotations produced 3 hits



LDLR-like (LRP1):

Annotation Number : CG33087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053087
Gbrowse : chr2R:4094022-4113243 (+) // 100.0 //
Probeset : 1624650_at
Accessions : protein= NP_788284;, nucleotide= NM_176104;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 //
FlyMine data for FBgn0053087.
Homophila reports that CG33087 is a close match (4e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
TRiP has 1 RNAi stocks for FBgn0053087 available for purchase.
VDRC has 6 RNAi stocks for FBgn0053087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 14 of 4 2.80Up
Head67 84 of 4 2.00Up
Eye62 44 of 4 1.88Up
Thoracicoabdominal ganglion74 54 of 4 2.30Up
Salivary gland8 50 of 4 0.25Down
Crop53 24 of 4 1.60Up
Midgut10 41 of 4 0.30Down
Tubule11 02 of 4 0.30Down
Hindgut16 24 of 4 0.50Down
Heart59 44 of 4 1.80Up
Fat body104 144 of 4 3.17Up
Ovary57 34 of 4 1.80Up
Testis8 02 of 4 0.20Down
Male accessory glands11 10 of 4 0.30Down
Virgin spermatheca37 54 of 4 1.14None
Mated spermatheca20 34 of 4 0.63Down
Adult carcass78 114 of 4 2.40Up
Larval CNS139 54 of 4 4.22Up
Larval Salivary gland7 20 of 4 0.22Down
Larval midgut3 10 of 4 0.11Down
Larval tubule67 74 of 4 2.10Up
Larval hindgut15 13 of 4 0.47Down
Larval fat body206 264 of 4 6.30Up
Larval trachea34 54 of 4 1.04None
Larval carcass41 94 of 4 1.26None
S2 cells (growing)202 124 of 4 6.16Up
Whole fly33 24 of 4



LDLR-like (LRP1):

Annotation Number : CG33087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053087
Gbrowse : chr2R:4094022-4094328 (+) // 100.0 //
Probeset : 1626279_at
Accessions : protein= NP_788284;, nucleotide= NM_176104;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 //
FlyMine data for FBgn0053087.
Homophila reports that CG33087 is a close match (4e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
TRiP has 1 RNAi stocks for FBgn0053087 available for purchase.
VDRC has 6 RNAi stocks for FBgn0053087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.40None
Head4 10 of 4 0.60None
Eye1 00 of 4 0.19None
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland6 10 of 4 0.81None
Crop5 20 of 4 0.70None
Midgut46 92 of 4 5.80Up
Tubule6 00 of 4 0.80None
Hindgut3 10 of 4 0.50None
Heart1 00 of 4 0.23None
Fat body8 60 of 4 1.07None
Ovary3 10 of 4 0.40None
Testis2 00 of 4 0.30None
Male accessory glands6 10 of 4 0.80None
Virgin spermatheca6 10 of 4 0.85None
Mated spermatheca8 00 of 4 1.01None
Adult carcass4 10 of 4 0.60None
Larval CNS5 20 of 4 0.64None
Larval Salivary gland6 10 of 4 0.82None
Larval midgut68 111 of 4 8.59Up
Larval tubule2 00 of 4 0.30None
Larval hindgut3 10 of 4 0.40None
Larval fat body6 10 of 4 0.70None
Larval trachea1 00 of 4 0.16None
Larval carcass5 10 of 4 0.74None
S2 cells (growing)4 10 of 4 0.60None
Whole fly8 30 of 4



LDLR-like (LRP1):

Annotation Number : CG33087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053087
Gbrowse : chr2R:4094022-4094328 (+) // 100.0 //
Probeset : 1627085_a_at
Accessions : protein= NP_788284;, nucleotide= NM_176104;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 //
FlyMine data for FBgn0053087.
Homophila reports that CG33087 is a close match (4e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
TRiP has 1 RNAi stocks for FBgn0053087 available for purchase.
VDRC has 6 RNAi stocks for FBgn0053087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.30None
Head1 00 of 4 0.50None
Eye2 10 of 4 0.64None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland4 20 of 4 1.35None
Crop1 00 of 4 0.50None
Midgut4 10 of 4 1.30None
Tubule6 00 of 4 1.80Up
Hindgut4 10 of 4 1.40None
Heart2 10 of 4 0.82None
Fat body5 40 of 4 1.58None
Ovary2 10 of 4 0.60None
Testis2 00 of 4 0.60None
Male accessory glands9 30 of 4 2.70None
Virgin spermatheca5 10 of 4 1.45None
Mated spermatheca7 10 of 4 2.11None
Adult carcass1 00 of 4 0.40None
Larval CNS2 10 of 4 0.64None
Larval Salivary gland6 10 of 4 1.96None
Larval midgut2 00 of 4 0.61None
Larval tubule7 20 of 4 2.20None
Larval hindgut1 00 of 4 0.36None
Larval fat body14 30 of 4 4.40Up
Larval trachea1 00 of 4 0.34None
Larval carcass4 10 of 4 1.17None
S2 cells (growing)2 00 of 4 0.59None
Whole fly3 10 of 4

Looking for FBgn0053087. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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