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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053093 through 18771 annotations produced 1 hits



(CG33093):

Annotation Number : CG33093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053093
Gbrowse : chr3R:18356588-18357281 (-) // 100.0 //
Probeset : 1623000_at
Accessions : protein= NP_788715;, nucleotide= NM_176538;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0053093.
VDRC has 2 RNAi stocks for FBgn0053093 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head0 ± 00 of 4 0.30None
Eye0 ± 00 of 4 0.23None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland2 ± 00 of 4 0.64None
Crop2 ± 10 of 4 0.80None
Midgut2 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.70Down
Hindgut3 ± 20 of 4 1.00None
Heart7 ± 00 of 4 2.32None
Fat body19 ± 62 of 4 5.99Up
Ovary1 ± 00 of 4 0.40None
Testis3 ± 00 of 4 1.00None
Male accessory glands2 ± 00 of 4 0.70None
Virgin spermatheca1 ± 00 of 4 0.43None
Mated spermatheca2 ± 10 of 4 0.87None
Adult carcass3 ± 20 of 4 1.20None
Larval CNS2 ± 20 of 4 0.70None
Larval Salivary gland8 ± 20 of 4 2.42None
Larval midgut1 ± 00 of 4 0.39None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut4 ± 10 of 4 1.32None
Larval fat body225 ± 234 of 468.40Up
Larval trachea7 ± 80 of 4 2.22None
Larval carcass1 ± 00 of 4 0.55None
S2 cells (growing)0 ± 00 of 4 0.29None
Whole fly3 ± 10 of 4

Looking for FBgn0053093. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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