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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053094 through 18771 annotations produced 1 hits



Syndapin (Synd):

Annotation Number : CG33094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053094
Gbrowse : chr3R:16658506-16665840 (+) // 100.0 //
Probeset : 1627498_at
Accessions : protein= NP_788697;, nucleotide= NM_176520;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0053094.
BDGP gene expression has embryonic in situ data for syndapin: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0053094 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain340 ± 64 of 4 1.70Up
Head415 ± 74 of 4 2.00Up
Eye1139 ± 384 of 4 5.52Up
Thoracicoabdominal ganglion322 ± 34 of 4 1.60Up
Salivary gland379 ± 94 of 4 1.84Up
Crop593 ± 174 of 4 2.90Up
Midgut362 ± 124 of 4 1.80Up
Tubule441 ± 334 of 4 2.10Up
Hindgut453 ± 124 of 4 2.20Up
Heart114 ± 84 of 4 0.55Down
Fat body129 ± 184 of 4 0.63Down
Ovary255 ± 74 of 4 1.20Up
Testis179 ± 84 of 4 0.90None
Male accessory glands138 ± 84 of 4 0.70Down
Virgin spermatheca154 ± 54 of 4 0.75Down
Mated spermatheca180 ± 74 of 4 0.88None
Adult carcass160 ± 74 of 4 0.80Down
Larval CNS253 ± 134 of 4 1.23Up
Larval Salivary gland166 ± 94 of 4 0.80Down
Larval midgut256 ± 154 of 4 1.24Up
Larval tubule342 ± 114 of 4 1.70Up
Larval hindgut339 ± 84 of 4 1.64Up
Larval fat body129 ± 64 of 4 0.60Down
Larval trachea184 ± 204 of 4 0.89None
Larval carcass243 ± 54 of 4 1.18Up
S2 cells (growing)225 ± 54 of 4 1.09None
Whole fly206 ± 84 of 4

Looking for FBgn0053094. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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