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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053099 through 18771 annotations produced 1 hits



(CG33099):

Annotation Number : CG33099
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053099
Gbrowse : chr3R:18354641-18356277 (-) // 100.0 //
Probeset : 1637063_at
Accessions : protein= NP_788714;, nucleotide= NM_176537;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0045544 // gibberellin 20-oxidase activity
FlyMine data for FBgn0053099.
BDGP gene expression has embryonic in situ data for CG33099: 36 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0053099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head15 ± 13 of 4 0.20Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.10Down
Salivary gland1454 ± 454 of 422.66Up
Crop54 ± 54 of 4 0.80None
Midgut219 ± 64 of 4 3.40Up
Tubule1231 ± 854 of 419.20Up
Hindgut46 ± 34 of 4 0.70Down
Heart24 ± 04 of 4 0.38Down
Fat body33 ± 104 of 4 0.53Down
Ovary25 ± 44 of 4 0.40Down
Testis6 ± 00 of 4 0.10Down
Male accessory glands6 ± 10 of 4 0.10Down
Virgin spermatheca44 ± 14 of 4 0.70Down
Mated spermatheca39 ± 24 of 4 0.62Down
Adult carcass24 ± 43 of 4 0.40Down
Larval CNS12 ± 24 of 4 0.20Down
Larval Salivary gland19 ± 54 of 4 0.31Down
Larval midgut205 ± 144 of 4 3.20Up
Larval tubule1504 ± 224 of 423.40Up
Larval hindgut107 ± 144 of 4 1.67None
Larval fat body910 ± 684 of 414.20Up
Larval trachea35 ± 94 of 4 0.56Down
Larval carcass18 ± 14 of 4 0.28Down
S2 cells (growing)62 ± 44 of 4 0.97None
Whole fly64 ± 44 of 4

Looking for FBgn0053099. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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