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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053108 through 18771 annotations produced 1 hits



(CG33108):

Annotation Number : CG33108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053108
Gbrowse : chr3R:19821392-19823265 (+) // 100.0 //
Probeset : 1631039_at
Accessions : protein= NP_001163706; /// NP_788728;, nucleotide= NM_001170235; /// NM_176551;
FlyMine data for FBgn0053108.
VDRC has 1 RNAi stocks for FBgn0053108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 2.30Up
Head35 ± 24 of 4 1.70Up
Eye74 ± 64 of 4 3.52Up
Thoracicoabdominal ganglion54 ± 24 of 4 2.60Up
Salivary gland50 ± 52 of 4 2.41Up
Crop34 ± 44 of 4 1.70Up
Midgut37 ± 24 of 4 1.80Up
Tubule25 ± 22 of 4 1.20None
Hindgut35 ± 14 of 4 1.70Up
Heart25 ± 14 of 4 1.22None
Fat body22 ± 50 of 4 1.05None
Ovary13 ± 14 of 4 0.60Down
Testis19 ± 14 of 4 0.90None
Male accessory glands36 ± 14 of 4 1.70Up
Virgin spermatheca33 ± 04 of 4 1.58Up
Mated spermatheca39 ± 34 of 4 1.87Up
Adult carcass26 ± 30 of 4 1.20None
Larval CNS56 ± 64 of 4 2.68Up
Larval Salivary gland44 ± 34 of 4 2.11Up
Larval midgut31 ± 44 of 4 1.48None
Larval tubule38 ± 34 of 4 1.80Up
Larval hindgut30 ± 04 of 4 1.46Up
Larval fat body23 ± 24 of 4 1.10None
Larval trachea35 ± 44 of 4 1.68Up
Larval carcass27 ± 14 of 4 1.31Up
S2 cells (growing)39 ± 24 of 4 1.88Up
Whole fly21 ± 14 of 4

Looking for FBgn0053108. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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