Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053111 through 18771 annotations produced 2 hits



/// off-schedule (CG33111 /// eIF4G2):

Annotation Number : CT37107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053111 /// FBgn0260634
Gbrowse : chr3R:19643948-19644937 (-) // 100.0 //
Probeset : 1634488_s_at
Accessions : protein= NP_001014646; /// NP_788725; /// NP_996272;, nucleotide= NM_001014646; /// NM_176548; /// NM_206549;
Pathway : 0016281 // eukaryotic translation initiation factor 4F complex // inferred from sequence similarity
Interpro : 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003743 // translation initiation factor
FlyMine data for FBgn0053111 /// FBgn0260634.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 1.00None
Head12 ± 14 of 4 0.90None
Eye5 ± 21 of 4 0.38Down
Thoracicoabdominal ganglion11 ± 10 of 4 0.90None
Salivary gland16 ± 61 of 4 1.25None
Crop28 ± 14 of 4 2.20Up
Midgut28 ± 24 of 4 2.10Up
Tubule9 ± 10 of 4 0.70Down
Hindgut30 ± 24 of 4 2.30Up
Heart13 ± 13 of 4 0.97None
Fat body9 ± 30 of 4 0.74None
Ovary16 ± 04 of 4 1.30Up
Testis18 ± 14 of 4 1.40None
Male accessory glands18 ± 11 of 4 1.40Up
Virgin spermatheca6 ± 11 of 4 0.47Down
Mated spermatheca6 ± 20 of 4 0.51Down
Adult carcass11 ± 20 of 4 0.90None
Larval CNS8 ± 14 of 4 0.63Down
Larval Salivary gland29 ± 14 of 4 2.24Up
Larval midgut17 ± 13 of 4 1.34None
Larval tubule56 ± 24 of 4 4.20Up
Larval hindgut25 ± 14 of 4 1.87Up
Larval fat body28 ± 14 of 4 2.10Up
Larval trachea25 ± 34 of 4 1.90Up
Larval carcass29 ± 34 of 4 2.22Up
S2 cells (growing)53 ± 34 of 4 4.03Up
Whole fly13 ± 03 of 4



(CG33111):

Annotation Number : CG33111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053111
Gbrowse : chr3R:19627478-19644954 (-) // 100.0 //
Probeset : 1630807_at
Accessions : protein= NP_001014646; /// NP_788725; /// NP_996272;, nucleotide= NM_001014646; /// NM_176548; /// NM_206549;
Interpro : 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0005488 // binding // inferred from elect
FlyMine data for FBgn0053111.
VDRC has 2 RNAi stocks for FBgn0053111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 64 of 4 1.80Up
Head36 ± 04 of 4 0.90None
Eye35 ± 24 of 4 0.87None
Thoracicoabdominal ganglion54 ± 54 of 4 1.30None
Salivary gland115 ± 84 of 4 2.83Up
Crop131 ± 44 of 4 3.20Up
Midgut119 ± 34 of 4 2.90Up
Tubule98 ± 74 of 4 2.40Up
Hindgut111 ± 44 of 4 2.70Up
Heart47 ± 34 of 4 1.17None
Fat body33 ± 64 of 4 0.83None
Ovary33 ± 34 of 4 0.80None
Testis30 ± 24 of 4 0.70Down
Male accessory glands147 ± 84 of 4 3.60Up
Virgin spermatheca65 ± 54 of 4 1.59Up
Mated spermatheca67 ± 64 of 4 1.65Up
Adult carcass53 ± 44 of 4 1.30None
Larval CNS77 ± 54 of 4 1.89Up
Larval Salivary gland254 ± 104 of 4 6.23Up
Larval midgut182 ± 34 of 4 4.48Up
Larval tubule232 ± 104 of 4 5.70Up
Larval hindgut204 ± 94 of 4 5.01Up
Larval fat body80 ± 74 of 4 2.00Up
Larval trachea177 ± 134 of 4 4.36Up
Larval carcass253 ± 204 of 4 6.22Up
S2 cells (growing)132 ± 44 of 4 3.24Up
Whole fly40 ± 14 of 4

Looking for FBgn0053111. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime