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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053116 through 18771 annotations produced 1 hits



(CG33116):

Annotation Number : CG33116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053116
Gbrowse : chr2L:19533472-19537365 (+) // 100.0 //
Probeset : 1640146_at
Accessions : protein= NP_788074;, nucleotide= NM_176060;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0008414 // CDP-alcohol phosphotransferase activity // inferred from sequence or structural similarity /// 0016740 // tr
FlyMine data for FBgn0053116.
VDRC has 2 RNAi stocks for FBgn0053116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain383 ± 74 of 4 1.90Up
Head151 ± 54 of 4 0.80Down
Eye238 ± 174 of 4 1.20None
Thoracicoabdominal ganglion337 ± 114 of 4 1.70Up
Salivary gland40 ± 33 of 4 0.20Down
Crop42 ± 44 of 4 0.20Down
Midgut207 ± 104 of 4 1.00None
Tubule53 ± 14 of 4 0.30Down
Hindgut108 ± 44 of 4 0.50Down
Heart25 ± 14 of 4 0.13Down
Fat body52 ± 44 of 4 0.26Down
Ovary515 ± 34 of 4 2.60Up
Testis23 ± 14 of 4 0.10Down
Male accessory glands42 ± 34 of 4 0.20Down
Virgin spermatheca49 ± 34 of 4 0.25Down
Mated spermatheca45 ± 34 of 4 0.23Down
Adult carcass54 ± 64 of 4 0.30Down
Larval CNS707 ± 254 of 4 3.57Up
Larval Salivary gland69 ± 44 of 4 0.35Down
Larval midgut357 ± 434 of 4 1.80Up
Larval tubule56 ± 34 of 4 0.30Down
Larval hindgut201 ± 124 of 4 1.02None
Larval fat body29 ± 24 of 4 0.10Down
Larval trachea177 ± 154 of 4 0.89None
Larval carcass103 ± 64 of 4 0.52Down
S2 cells (growing)372 ± 104 of 4 1.88Up
Whole fly198 ± 64 of 4

Looking for FBgn0053116. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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