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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053127 through 18771 annotations produced 1 hits


(CG33127):

Annotation Number : CG33127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053127
Gbrowse : chr2L:322130-322985 (+) // 100.0 //
Probeset : 1626718_at
Accessions : protein= NP_787956;, nucleotide= NM_175942;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0053127.
Homophila reports that CG33127 is a close match (2e-11) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 1 RNAi stocks for FBgn0053127 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 20 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland6 ± 00 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut3915 ± 854 of 411.00Up
Tubule13 ± 31 of 4 0.00Down
Hindgut470 ± 234 of 4 1.30None
Heart2 ± 10 of 4 0.01Down
Fat body6 ± 20 of 4 0.02Down
Ovary3 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.00Down
Male accessory glands1 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass10 ± 40 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut1596 ± 1534 of 4 4.48Up
Larval tubule6 ± 22 of 4 0.00Down
Larval hindgut168 ± 224 of 4 0.47Down
Larval fat body9 ± 31 of 4 0.00Down
Larval trachea2 ± 30 of 4 0.01Down
Larval carcass11 ± 10 of 4 0.03Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly356 ± 464 of 4

Looking for FBgn0053127. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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