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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0053128 through 18771 annotations produced 1 hits

aspartic-type endopeptidase (CG33128):

Annotation Number : CG33128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053128
Gbrowse : chr2L:1494089-1495458 (+) // 100.0 //
Probeset : 1623292_at
Accessions : protein= NP_787961;, nucleotide= NM_175947;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// 0004190 // aspartic-type endo
FlyMine data for FBgn0053128.
Homophila reports that CG33128 is a close match (1e-54) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
VDRC has 3 RNAi stocks for FBgn0053128 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.00None
Head1 00 of 4 0.90None
Eye2 00 of 4 1.35None
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland4 10 of 4 2.32None
Crop3 10 of 4 1.80None
Midgut1 00 of 4 0.90None
Tubule3 00 of 4 2.30Up
Hindgut1 00 of 4 0.70None
Heart1 00 of 4 1.09None
Fat body8 40 of 4 4.93None
Ovary3 10 of 4 2.00None
Testis4 20 of 4 2.70None
Male accessory glands1 00 of 4 0.80None
Virgin spermatheca13 20 of 4 7.62Up
Mated spermatheca17 51 of 410.44None
Adult carcass1 00 of 4 0.70None
Larval CNS8 10 of 4 5.06Up
Larval Salivary gland2 00 of 4 1.28None
Larval midgut5657 2294 of 43327.96Up
Larval tubule35 212 of 420.70None
Larval hindgut9 10 of 4 5.49Up
Larval fat body11 30 of 4 6.50None
Larval trachea2 20 of 4 1.26None
Larval carcass7 20 of 4 4.18None
S2 cells (growing)1 00 of 4 0.84None
Whole fly1 00 of 4

Looking for FBgn0053128. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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