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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053129 through 18771 annotations produced 1 hits



(CG33129):

Annotation Number : CG33129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053129
Gbrowse : chr2L:10965604-10966672 (-) // 100.0 //
Probeset : 1635723_s_at
Accessions : protein= NP_788023; /// NP_788024; /// NP_788025; /// NP_788026;, nucleotide= NM_176009; /// NM_176010; /// NM_176011; /// NM_176012;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0053129.
BDGP gene expression has embryonic in situ data for CG33129: 36 pix of staining in 11 body parts.
BioGrid reports that CG33129 interacts with CG3736 CG8929 CG4813 .
TRiP has 1 RNAi stocks for FBgn0053129 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain281 ± 94 of 4 0.70Down
Head303 ± 274 of 4 0.80None
Eye425 ± 224 of 4 1.12None
Thoracicoabdominal ganglion242 ± 214 of 4 0.60Down
Salivary gland149 ± 114 of 4 0.40Down
Crop598 ± 194 of 4 1.60Up
Midgut180 ± 54 of 4 0.50Down
Tubule188 ± 84 of 4 0.50Down
Hindgut444 ± 254 of 4 1.20None
Heart450 ± 64 of 4 1.19None
Fat body501 ± 1934 of 4 1.33None
Ovary660 ± 184 of 4 1.70Up
Testis247 ± 74 of 4 0.70Down
Male accessory glands133 ± 104 of 4 0.40Down
Virgin spermatheca231 ± 24 of 4 0.61Down
Mated spermatheca196 ± 204 of 4 0.52Down
Adult carcass417 ± 214 of 4 1.10None
Larval CNS549 ± 464 of 4 1.45Up
Larval Salivary gland707 ± 1294 of 4 1.87None
Larval midgut190 ± 174 of 4 0.50Down
Larval tubule477 ± 144 of 4 1.30Up
Larval hindgut320 ± 154 of 4 0.85None
Larval fat body2154 ± 1954 of 4 5.70Up
Larval trachea455 ± 684 of 4 1.21None
Larval carcass425 ± 214 of 4 1.13None
S2 cells (growing)1180 ± 354 of 4 3.12Up
Whole fly378 ± 244 of 4

Looking for FBgn0053129. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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