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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0053139 through 18771 annotations produced 1 hits



Ranbp11 (Ranbp11):

Annotation Number : CG33139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053139
Gbrowse : chr2R:11570220-11574920 (+) // 99.85 //
Probeset : 1630177_at
Accessions : protein= NP_788357;, nucleotide= NM_176177;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // non-traceable author stat
FlyMine data for FBgn0053139.
VDRC has 3 RNAi stocks for FBgn0053139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 34 of 4 1.00None
Head57 ± 14 of 4 0.70None
Eye106 ± 34 of 4 1.30None
Thoracicoabdominal ganglion107 ± 14 of 4 1.30None
Salivary gland75 ± 74 of 4 0.92None
Crop70 ± 54 of 4 0.90None
Midgut75 ± 13 of 4 0.90None
Tubule72 ± 14 of 4 0.90Down
Hindgut57 ± 34 of 4 0.70None
Heart61 ± 34 of 4 0.75None
Fat body70 ± 74 of 4 0.86None
Ovary147 ± 34 of 4 1.80Up
Testis132 ± 44 of 4 1.60Up
Male accessory glands57 ± 34 of 4 0.70None
Virgin spermatheca63 ± 44 of 4 0.77None
Mated spermatheca65 ± 54 of 4 0.79None
Adult carcass63 ± 64 of 4 0.80None
Larval CNS120 ± 114 of 4 1.47Up
Larval Salivary gland92 ± 34 of 4 1.13None
Larval midgut124 ± 94 of 4 1.51Up
Larval tubule72 ± 24 of 4 0.90None
Larval hindgut104 ± 64 of 4 1.27None
Larval fat body97 ± 104 of 4 1.20None
Larval trachea137 ± 84 of 4 1.68Up
Larval carcass84 ± 64 of 4 1.03None
S2 cells (growing)117 ± 34 of 4 1.43Up
Whole fly82 ± 94 of 4

Looking for FBgn0053139. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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